Chromosome recognition

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Organisms

Homo sapiens (26)
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Bradyrhizobium diazoefficiens USDA 110 (1)
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Repository

biostudies-arrayexpress (316)
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Tissue

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Disease

Burkitt's lymphoma (1)
Lung large cell carcinoma (1)
Normal (1)
Acute leukemia (1)
Breast cancer (1)
Down syndrome (1)
Mulibrey nanism (1)

Technology Type

Mass Spectrometry (19)
Shotgun proteomics (11)
Bottom-up proteomics (4)
Mass spectrometry (3)
Affinity purification coupled with mass spectrometry proteomics (3)
NMR spectroscopy (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
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Instrument Platform

NextSeq 2000 (3)
Illumina HiSeq 2000 (3)
Illumina HiSeq 4000 (3)
NextSeq 500 (3)
GenePix 4000B [Axon Instruments] (2)
Illumina MiSeq (2)
Qiagen RNAeasy, Bioanalyzer QubitFluorometer, Agilent 2100, RNA Pico 6000 chip (1)
ScanArray 5000 [PerkinElmer] (1)
Illumina Genome Analyzer II (1)
Ion Torrent PGM (1)
R (1)
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240-MS GC Ion Trap (Varian) (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2010 (49)
2012 (47)
2011 (46)
2013 (37)
2015 (36)
2014 (36)
2016 (31)
2025 (29)
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2009 (14)
2008 (14)
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2018 (8)
2007 (7)
2006 (7)
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2021 (6)
2020 (5)
2019 (4)
2026 (3)
2017 (3)
2005 (2)

CHEBI ID

CHEBI:140611 (1)
CHEBI:18059 (1)
CHEBI:60647 (1)
CHEBI:15674 (1)
CHEBI:15903 (1)
CHEBI:26271 (1)
CHEBI:25094 (1)
CHEBI:18237 (1)
CHEBI:27570 (1)
CHEBI:30751 (1)
CHEBI:18186 (1)
CHEBI:26986 (1)
CHEBI:28300 (1)
CHEBI:25017 (1)
CHEBI:17268 (1)
CHEBI:28044 (1)
CHEBI:28683 (1)
CHEBI:1148 (1)
CHEBI:27266 (1)
CHEBI:16449 (1)
CHEBI:29016 (1)
CHEBI:15366 (1)
CHEBI:78320 (1)
CHEBI:16737 (1)
CHEBI:16919 (1)
CHEBI:17191 (1)
CHEBI:30769 (1)
CHEBI:20067 (1)

Metabolite Name

1-Methyl-4-acetylaminomethyl-1,2,3,6-tetrahydropyridine (1)
(+/-)-2,2,4,7,7,9-Hexamethyl-1,6-dioxaspiro[4.4]nonane (1)
2,2,4,4,6,6-hexamethyl-1,3,5-Trithiane (1)
6,6-Dimethyl-(1S)-Bicyclo(3.1.1)hept-2-ene-2-methanol (1)
7-Chloro-1-{[3-(dimethylamino)propyl]imino}-1,3,4,10-tetrahydro-10-hydroxy (1)
1-Trimethylsilyloxy-2-trimethylsilylamino-3-(3′-methoxy-4″-trimethylsilyloxy (1)
Hexakis-O-(trimethylsilyl) Hexit-1,5-D2 (1)
1,2,3,4,5-pentakis-O-(trimethylsilyl)-L-Sorbopyranose (1)
[1,3-Di(4-pyridyl)propane] (Bis{bis[9-borabicyclo(3.3.1)nonan-9-yl]oxide}) (1)
1a,2,5,5a,6,9,10,10a–octahydro-5a-hydroxy-4-(hydroxymethyl)-1-Hexadecanoic acid (1)
1,5-didesoxy-tris-O-(trimethylsilyl) D2-pentitol-2,4 (1)
1,8-Dimethyl-3,6-diazahomoadamantan-9-ol (1)
8-aalpha-Benzyloxymethyl-7alpha-hydroxy-4alpha-methoxycarbonyl-3-OXO-4aalpha-6.7.8.A.tetrahydroisochromane (1)
3-benzyl-2-cyclohexyl-3-hydroxy-2,3-dihydroIsoindol-1-one (1)
3.8.11.Trimethyl-4.7.10-trioxo-6.9-dimethoxy-1.2.3.4.5.6.7.10.-octahydro-1.5-imino-3-benzazo-cine (1)
7-[2-(3-Hydroxyoctyl)-5-hydroxy-3-oxo-cyclopentyl]heptanoic acid (1)
N-propoxycarbonyl-L-phenylalanine pentyl ester (1)
6-Methoxy-4-methylquinazolin-2-ylsulfanyl)acetic acid ethyl ester (1)
2-(1,3-Dioxo-1,3-dihydroisoindol-2-yl)-3-hydroxypropanoic acid (1)
Phthaloylaspartic acid (1)
5,6-dihydro-3-(3,4-dimethoxyphenyl)-4,6,6-trimethyl Pyridin-2(1H)-one (1)
1-[5-nitro-2-(1-piperidyl)benzylideno]amino guanidine (1)
1-Methyl-trans-decahydroquinol-5(equat)-ol (1)
N′-[2-(ethyl)Butylamino-5-nitrobenzylidine] (1)
1-cyano-1-(1-cyclopenten-3-one-1-yl)-acetic acid ethyl ester (1)
Beta,4-dimethyl-3-Cyclohexene-1-ethanol (1)
Tricyclo[4.3.1.13,8]undecan-1-amine (1)
Decahydroquinol-5(equat)-ol (1)
1,4,13-trioxa-7,10,16,19-tetraazacycloheneicosane-6,9,17,20-tetrone (1)
HLDL (1)

First Public Date

2025 (23)
2024 (17)
2014 (16)
2023 (8)
2013 (7)
2020 (6)
2016 (6)
2018 (5)
2021 (4)
2026 (3)
2022 (3)
2017 (2)
2019 (1)
2015 (1)

Classification

bacteria (2)
helminths (1)

Study type

Transcription profiling by array (98)
ChIP-seq (80)
RNA-seq of coding RNA (39)
ChIP-chip by tiling array (25)
Comparative genomic hybridization by array (12)
Other (10)
Methylation profiling by high throughput sequencing (10)
ChIP-chip by array (8)
RNA-seq of non coding RNA (7)
Unknown experiment type (5)
DNA-seq (5)
Transcription profiling by tiling array (3)
Genotyping by array (3)
MicroRNA profiling by array (2)
CUT&RUN (2)
Cell line - High-throughput sequencing (1)
CLIP-seq (1)
Spatial transcriptomics by high-throughput sequencing (1)
Hi-C (1)
Proteomic profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2010 (74)
2015 (73)
2011 (73)
2012 (71)
2014 (69)
2013 (63)
2016 (61)
2023 (51)
2025 (48)
2024 (43)
2022 (42)
2018 (42)
2017 (42)
2021 (41)
2019 (36)
2009 (33)
2020 (32)
2008 (24)
2007 (19)
2006 (17)
2005 (12)
2003 (7)
2026 (6)
2002 (6)
2001 (6)
1998 (6)
2004 (4)
2000 (4)
1999 (3)
1997 (1)

Lab affiliation

Functional Proteomics, ICR (2)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (2)
1. Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK 2. Technical University, Berlin 13355, Germany (1)
Department of Genetics, Cell Biology, & Anatomy Buckley Lab University of Nebraska Medical Center Omaha, Nebraska United States of America (1)
Department of Molecular Biology and Genetics, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. (1)
EPFL SV SSV-GE AI 0149 (Bâtiment AI) Station 19 CH-1015 Lausanne (1)
Henan agricultural university (1)
Henan agriculture university (1)
Instituto de Agricultura Sostenible-CSIC Av. Menéndez Pidal s/n Campus Alameda del Obispo Apartado 4084, 14080 Córdoba, Spain (1)
MRC Laboratory of Molecular Biology (1)
Mass Spectrometry Proteomics Science Technology Platform, The Francis Crick Institute (1)
Molecular Biology Dept, Biomedical Center, Ludwig-Maximilians-University Munich, Großhadernerstr. 9, 82152 Planegg-Martinsried (Germany) (1)
Molecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, USA (1)
National Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, China (1)
National Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University,China (1)
Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Sciences and Oceanology, Shenzhen University, Shenzhen, Guangdong, P. R. China (1)
Sulfaging group, Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V., Dortmund, Germany (1)

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U2AF1 mutations alter splice site recognition in hematological malignancies

Whole-exome sequencing studies have identified common mutations affecting genes encoding components of the RNA splicing machinery in hematological malignancies. Here, we sought to determine how mutations affecting the 3' splice site recognition factor U2AF1 altered its normal role in RNA splicing. W...

ORGANISM(S): Homo sapiens

2014-09-23 | E-GEOD-58871 | biostudies-arrayexpress

Gene expression variation in Y-chromosome substitution lines of Drosophila melanogaster

These arrays were done in the context of a study to probe gene expression variation across Y-chromosome substitution lines of Drosophila melanogaster Keywords: polymorphism, evolution, chromosome substitution This series contains all the arrays and designs described in Lemos et al.

ORGANISM(S): Drosophila melanogaster

2008-04-29 | E-GEOD-9457 | biostudies-arrayexpress

Analysis of chromosome III replicators reveals an unusual structure for the ARS318 silencer origin and a conserved WTW sequence within the origin recognition complex binding site.

Not available

S-EPMC2519699 | biostudies-literature

Genome-Wide Analysis of Host-Chromosome Binding Sites for Epstein-Barr Virus Nuclear Antigen 1 (EBNA1)

The Epstein-Barr Virus (EBV) Nuclear Antigen 1 (EBNA1) protein is required for the establishment of EBV latent infection in proliferating B-lymphocytes. EBNA1 is a multifunctional DNA-binding protein that stimulates DNA replication at the viral origin of plasmid replication (OriP), regulates transc...

ORGANISM(S): Homo sapiens

2011-07-16 | E-GEOD-30709 | biostudies-arrayexpress

KDM2B links the Polycomb Repressive Complex 1 (PRC1) to recognition of CpG islands

This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

ORGANISM(S): Mus musculus

2012-12-26 | E-GEOD-41267 | biostudies-arrayexpress

Initiation of DNA replication from non-canonical sites on an origin-depleted chromosome

Eukaryotic DNA replication initiates from multiple sites on each chromosome called replication origins. In the budding yeast Saccharomyces cerevisiae, origins are defined at discrete sites. Regular spacing and diverse firing characteristics of origins are thought to be required for efficient complet...

ORGANISM(S): Saccharomyces cerevisiae

2014-09-26 | E-GEOD-61743 | biostudies-arrayexpress

Engineering of a histone-recognition domain in Dnmt3a alters the epigenetic landscape of ESCs revealing changes in lineage specification and chromosomal stability

This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

ORGANISM(S): Mus musculus

2015-06-22 | E-GEOD-57577 | biostudies-arrayexpress

Homologous chromosome associations in domains before meiosis could facilitate chromosome recognition and pairing in wheat.

Not available

S-EPMC9217977 | biostudies-literature

Divergent evolutionary strategies for selective sex chromosome regulation in Drosophila

The dosage compensation complex (DCC) of Drosophila identifies its X chromosomal binding sites with exquisite selectivity. The principles that assure this vital targeting are known from the D. melanogaster model: DCC-intrinsic specificity of DNA binding, cooperativity with the CLAMP protein, and non...

ORGANISM(S): Drosophila virilis

2021-06-23 | PXD023747 | Pride

Genome-wide localization of ORC and MCM binding sites and identification of replication origins in S. pombe

DNA replication of eukaryotic chromosomes initiates at a number of discrete loci, called replication origins. Distribution and regulation of origins are important for complete duplication of the genome. Here, we determined locations of Orc1 and Mcm6, components of pre-replicative complex (pre-RC),...

ORGANISM(S): Schizosaccharomyces pombe

2010-06-11 | E-GEOD-6523 | biostudies-arrayexpress

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