Clostridium cellulolyticum

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Unknown (39)
Genomics (7)
Transcriptomics (4)
Proteomics (3)
Metabolomics (2)

Organisms

Ruminiclostridium cellulolyticum (3)
Roseburia hominis (2)
Roseburia intestinalis (2)
Piromyces sp. (2)
Ruminococcus sp. (2)
Lachnospira eligens (2)
[Eubacterium] cellulosolvens (2)
Neocallimastix frontalis (2)
Cellulomonas fimi (2)
Clostridium cellulovorans (2)
Fibrobacter succinogenes (2)
Pseudobutyrivibrio xylanivorans (2)
Piromyces sp. 'equi' (2)
Piromyces rhizinflatus (2)
Orpinomyces joyonii (2)
Enterobacter sp. (2)
Agathobacter rectalis (2)
Neocallimastix patriciarum (2)
Cellulomonas flavigena (2)
uncultured Neocallimastigales (2)
Acetivibrio clariflavus (2)
Segatella bryantii (2)
Eudiplodinium maggii (2)
Pseudobacteroides cellulosolvens (2)
Piromyces communis (2)
Ruminococcus flavefaciens (2)
Hominimerdicola alba (2)
Butyrivibrio fibrisolvens (2)
Orpinomyces sp. (2)
Ruminiclostridium cellulolyticum H10 (1)

Organisms

Ruminiclostridium cellulolyticum (2)
Ruminiclostridium cellulolyticum H10 (1)
bacterial mixed DNA library (1)

Repository

ENA (6)
geo (3)
pride (3)
biostudies-arrayexpress (2)
MetaboLights (2)

Tissue

Cell culture (2)

Technology Type

Mass Spectrometry (3)
Mass spectrometry (2)
Shotgun proteomics (2)
Data-dependent acquisition (1)

Instrument Platform

Agilent 5975E GC/MSD (Agilent) (1)
5975C Series GC/MSD (Agilent) (1)

Publication Date

2017 (4)
2015 (2)
2022 (1)
2019 (1)
2025 (1)
2023 (1)

CHEBI ID

CHEBI:61572 (2)
CHEBI:42383 (2)
CHEBI:17327 (2)
CHEBI:28260 (2)
CHEBI:22470 (2)
CHEBI:17521 (2)
CHEBI:17992 (2)
CHEBI:26984 (2)
CHEBI:33508 (2)
CHEBI:22211 (2)
CHEBI:27693 (2)
CHEBI:17822 (2)
CHEBI:18237 (2)
CHEBI:22660 (2)
CHEBI:22653 (2)
CHEBI:28757 (2)
CHEBI:26986 (2)
CHEBI:17234 (2)
CHEBI:28300 (2)
CHEBI:16971 (2)
CHEBI:17754 (2)
CHEBI:30997 (2)
CHEBI:37654 (2)
CHEBI:15741 (2)
CHEBI:6650 (2)
CHEBI:28044 (2)
CHEBI:16010 (2)
CHEBI:18300 (2)
CHEBI:48131 (2)
CHEBI:27897 (2)

Metabolite Name

Threonic acid (2)
Phytol (2)
Glyceric acid (2)
Galactose (2)
Digalactosylglycerol (2)
Alpha-linolenic acid (2)
Glutamic acid (2)
Aspartic acid (2)
Linoleic acid (2)
Alpha-tocopherol (2)
5-oxo-proline (2)
Beta-sitosterol (2)
Tryptophan (2)
Serine (2)
Asparagine (2)
Phenylalanine (2)
Fructose (2)
Threonine (2)
Glucose (2)
Glutamine (2)
Maleic acid (2)
Palmitic acid (2)
Citric acid (2)
Glycerol (2)
Sucrose (2)
Succinic acid (2)
Malic acid (2)
15.37 437 361 217 315 sugar (1)
14.80 437 361 217 385 369 sugar (1)
14.73 437 361 217 385 413 sugar (1)

First Public Date

2013 (2)
2020 (1)
2019 (1)
2015 (1)
2014 (1)

Study type

Transcription profiling by array (1)
RNA-seq of coding RNA (1)

Release Date

2013 (4)
2022 (3)
2015 (3)
2012 (3)
2019 (2)
2017 (2)
2016 (2)
2010 (2)
2003 (2)
2002 (2)
2000 (2)
1999 (2)
2025 (1)
2024 (1)
2021 (1)
2020 (1)
2018 (1)
2014 (1)
2011 (1)
2007 (1)
2006 (1)
2004 (1)
2001 (1)
1998 (1)

Lab affiliation

Biomic Team, Environmental Technologies Department, Irstea, France (1)
Department of Microbiology and Plant Biology School of Computer Science University of Oklahoma (1)
University of Oklahoma, Norman, OK, USA (1)

Tags

xref:PubMed:25908225 (1)
xref:PubMed:40444980 (1)
xref:PubMed:29467821 (1)

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Genome-wide maps of primary and processed start-sites of transcripts revealed mechanism controlling in vivo stoichiometry of protein complex in bacteria

Here a differential mRNA-sequencing (dRNA-Seq) strategy was employed to distinguish transcriptional start-sites (TSs) and post-transcriptional processed sites (PSs) of transcripts in the cellulolytic mesophile Clostridium cellulolyticum. PS-harboring genes usually encode heteromultimeric complexes...

ORGANISM(S): [Clostridium] cellulolyticum

2015-04-27 | E-GEOD-57652 | biostudies-arrayexpress

Shotgun proteome analysis of the bacterium Clostridium cellulolyticum

Biofuel production from lignocellulosic waste and residues is a promising option to mitigate the environmental costs associated to energy production. However, the difficulty to cost-effectively overcome lignocellulose recalcitrance hampers a widespread application of such bioprocesses. Through an in...

ORGANISM(S): Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10)

2017-01-30 | PXD001051 | Pride