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ProteomicsData for Mass spectrometry analysis of collagen IV
Data for PHFR9 7S: 1. Raw file (6 files) 2. IDPicker files (1 file) 3. Database (1 file) Data for EHS mouse collagen IV: 1.Raw file ( 21 files) 2.IDPicker files (7 files) 3.Database (3 files) Mouse_data_CID_1=Trypsin;Mouse_data_CID_2=Glu C; Mouse_data_CID_3=Trypsin +Glu C; Mouse_data_ETD_1=Trypsin (...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) Mus Musculus (ncbitaxon:10090) 
2015-08-17 | MSV000079260 | MassIVE
ProteomicsLysyl hydroxylase 3 mediated post-translational modifications are required for proper biosynthesis of collagen a1a1a2(IV)
We performed proteomic identification of type IV collagen gel bands from wild-type and lysyl hydroxylase 3 knockout cells by LC-MS after trypsin digestion.
ORGANISM(S): Mus Musculus (mouse) 
2022-11-21 | PXD035051 | JPOST Repository
ProteomicsEvolution of Collagen IV chains. Dogfish Lens
Evolution of Collagen IV chains from ministeria to ctenophora to hagfish/dogfish.
ORGANISM(S): Squalus acanthias 
2025-06-16 | PXD042111 | Pride
Collagen iv 
ProteomicsAnalysis of prolyl 4-hydroxylation of P4ha1 KO MEFs and P4ha2 KO mouse kidneys
We established a mouse embryonic fibroblast (MEF) cell line derived from mice that have a genetic ablation of of P4ha1. Type I collagen produced by these cells in presence of ascorbate was collected and partially purified by precipitation. Site specific hydroxylation analysis was performed using mas...
ORGANISM(S): Mus musculus (Mouse) 
2023-12-15 | PXD035945 | Pride
Mouse Prolyl 4-hydroxylation Collagen 
ProteomicsPreservation of collagen in the soft tissue of frozen mammoths
To evaluate whether collagen is preserved in the soft tissues of frozen mammoths for 40,000 years, we performed protein identification of mammoth lung and kidney (and elephant bone and kidney as controls) after trypsin digestion.
ORGANISM(S): Mammuthus Primigenius Elephas Maximus Indicus 
2021-10-05 | PXD024006 | JPOST Repository
TranscriptomicsRNA-seq of cancer cell collagen tracks
Collagen tracks deposited by breast cancer cells contain specific miRNAs which reprogram non-invasive cells into highly pro-metastatic ones by inducing a partial epithelial–mesenchymal transition (EMT) associated with an increase in ECM degradation and cell invasiveness.
ORGANISM(S): Homo sapiens 
2025-12-14 | E-MTAB-15636 | biostudies-arrayexpress
TranscriptomicsGenome-wide DNA methylation identifies trophoblast invasion-related genes: Claudin-4 and Fucosyltransferase IV control mobility via altering matrix metalloproteinase activity
Previously we have shown that extravillous cytotrophoblast (EVT) outgrowth and migration on a collagen gel explant model were restricted by exposure to decidual natural killer cells (dNK). This study investigates the molecular causes behind this phenomenon. Genome wide DNA methylation of exposed and...
ORGANISM(S): Homo sapiens 
2015-04-07 | E-GEOD-60885 | biostudies-arrayexpress
TranscriptomicsMadin-Darby Canine Kidney (MDCK) cells grown in 2-dimensional and 3-dimensional type I collagen culture.
In order to gain insight into epithelial morphogenesis and the influence of culture geometry on gene expression patterns, Madin Darby Canine Kidney (MDCK) epithelial cells where grown in 2-dimensional (2D) culture or 3-dimensional (3D) culture . MDCK cells cultured in 2D were plated atop a pre-soli...
ORGANISM(S): Canis lupus familiaris 
2013-06-03 | E-GEOD-28381 | biostudies-arrayexpress
GenomicsiPSC-derived type IV collagen α5-expressing kidney organoids model Alport syndrome
iPSC-derived type IV collagen α5-expressing kidney organoids model Alport syndrome
PRJNA989660 | ENA
ProteomicsQuantitative Proteome Analysis Reveals Increased Content of Basement Membrane Proteins in Arteries from Patients with Type 2 Diabetes and Lower Levels among Metformin Users
We analyzed non-atherosclerotic repair arteries gathered at coronary by-pass operations from 30 patients with type 2 diabetes, as well as from 30 age- and gender-matched non-diabetic individuals. Quantitative proteome analysis was done by iTRAQ-labelling and LC-MS/MS analysis on individual arterial ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-03-31 | MSV000080848 | MassIVE
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