Comparative quantitative proteomics

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Proteomics (971)
Unknown (500)
Transcriptomics (47)
Genomics (30)
Metabolomics (9)
Other (6)

Organisms

Homo sapiens (116)
Mus musculus (23)
Arabidopsis thaliana (6)
Staphylococcus aureus (5)
Rattus norvegicus (5)
Gallus gallus (4)
Oncorhynchus mykiss (2)
Saccharomyces cerevisiae (2)
Shewanella oneidensis MR-1 (2)
Solanum lycopersicum (2)
Agrobacterium tumefaciens (1)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (1)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (1)
Thermoplasma acidophilum DSM 1728 (1)
Saccharomyces paradoxus (1)
Toxoplasma gondii (1)
Brassica napus (1)
Streptomyces coelicolor (1)
Oryza sativa (1)
Klebsiella pneumoniae (1)
Streptococcus pneumoniae (1)
Danio rerio (1)
Staphylococcus aureus subsp. aureus N315 (1)
Staphylococcus aureus subsp. aureus Mu50 (1)
Staphylococcus aureus subsp. aureus NCTC 8325 (1)
Staphylococcus aureus subsp. aureus COL (1)
Staphylococcus aureus subsp. aureus MW2 (1)
Staphylococcus aureus subsp. aureus MSSA476 (1)
Staphylococcus aureus subsp. aureus MRSA252 (1)
Staphylococcus aureus subsp. aureus USA300 (1)

Organisms

Homo sapiens (7)
Mus musculus (5)
Xenopus laevis (1)
Shewanella oneidensis MR-1 (1)
Macaca fascicularis (1)
Staphylococcus aureus (1)
Sus scrofa domesticus (1)

Repository

pride (701)
iProX (118)
PeptideAtlas (64)
MassIVE (51)
biostudies-arrayexpress (48)
ENA (21)
PAXDB (17)
jPOST (9)
MetaboLights (9)
EGA (7)
geo (7)
GPMDB (6)
PanoramaPublic (5)

Tissue

Cell culture (114)
Others (63)
Plant cell (47)
Brain (35)
Epithelial cell (32)
Leaf (30)
Root (25)
Blood serum (17)
Whole body (16)
Blood plasma (15)
Liver (15)
Permanent cell line cell (15)
Cell suspension culture (13)
Heart (13)
Kidney (12)
Fibroblast (11)
Stem cell (9)
Colon (8)
Hepatocyte (8)
B cell (7)
Blood (7)
Blood cell (7)
Cerebrospinal fluid (7)
Lung (7)
Bone marrow (6)
Embryonic stem cell (6)
Macrophage (6)
Blood platelet (5)
Milk (5)
Ovary (5)

Disease

Disease free (20)
Breast cancer (14)
Cardiovascular system disease (11)
Malignant neoplasm of ovary (8)
COVID-19 (7)
Colon cancer (7)
Not Available (6)
Alzheimer's disease (6)
Prostate adenocarcinoma (6)
Glioblastoma (5)
Melanoma (4)
Wounds and Injuries (4)
Acute leukemia (3)
Brain cancer (3)
Celiac disease (3)
Non-small cell lung carcinoma (3)
Obesity (3)
Tuberculosis (3)
Brain disease (2)
Cervix carcinoma (2)
Chronic myeloid leukemia (2)
Epilepsy (2)
Inherited metabolic disorder (2)
Lung adenocarcinoma (2)
Lysosomal storage disease (2)
Mastitis (2)
Multiple system atrophy (2)
Pancreas adenocarcinoma (2)
Pancreatic cancer (2)
Parkinson's disease (2)

Technology Type

Mass Spectrometry (701)
Shotgun proteomics (478)
Bottom-up proteomics (98)
Data-dependent acquisition (55)
SWATH MS (44)
Gel-based experiment (29)
Data-independent acquisition (23)
Affinity purification coupled with mass spectrometry proteomics (21)
Top-down proteomics (17)
HDMSE (11)
SRM/MRM (11)
Mass spectrometry (8)
MSE (5)
DiaPASEF (3)
NMR spectroscopy (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Mass spectrometry imaging (2)
Proteogenomics (2)
Illumina HumanMethylation450K, Illumina HiSeq 2500, Illumina InfiniumCoreExome-24v1-1_A, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500, Illumina HumanMethylation450K, Illumina InfiniumCoreExome-24v1-1_A (1)
All-ion fragmentation (1)
Glycoproteomics (1)
RNA mass spectrometry (1)

Instrument Platform

Q Exactive (11)
Orbitrap Fusion Lumos (8)
LTQ Orbitrap (8)
Instrument (6)
LTQ Orbitrap Elite (6)
LTQ Orbitrap Velos (4)
Orbitrap Eclipse (3)
Q Exactive HF-X (3)
Liquid Chromatography MS - positive - reverse phase (3)
Q Exactive HF (2)
Direct infusion MS - negative (2)
Direct infusion MS - positive (2)
Liquid Chromatography MS - negative - reverse phase (2)
Affymetrix Gene Atlas System (1)
Affymetrix GeneChip Scanner 3000 7G (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 3000 (1)
NextSeq 500 (1)
Dionex UltiMate 3000 connected to Q Exactive HF-X mass spectrometer (1)
LTQ (1)
LTQ XL (1)
LTQ XL ETD (1)
MS:1000031 (1)
MicrOTOF-Q II (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
Q Exactive mass spectrometer (Thermo Scientific) (1)
Q-Exactive HF (QE) Quadrupole-Obitrap mass spectrometer (1)
Thermo Q-Exactive HF (QE) Quadrupole-Obitrap mass spectrometer (1)
TripleTOF 6600 (1)

Publication Date

2022 (123)
2020 (98)
2021 (95)
2023 (93)
2025 (87)
2019 (84)
2013 (68)
2024 (61)
2026 (54)
2018 (51)
2017 (51)
2016 (35)
2015 (28)
2014 (19)
2011 (14)
2012 (12)
2010 (8)
2008 (2)
2009 (1)
2007 (1)
2005 (1)
2003 (1)

UNIPROT ID/AC

449447.MAE_04790 (6)
449447.MAE_07440 (6)
449447.MAE_10380 (6)
449447.MAE_10510 (6)
449447.MAE_10730 (6)
449447.MAE_10800 (6)
449447.MAE_13300 (6)
449447.MAE_25300 (6)
449447.MAE_41160 (6)
449447.MAE_43300 (6)
449447.MAE_45140 (6)
449447.MAE_45460 (6)
449447.MAE_47540 (6)
449447.MAE_48060 (6)
449447.MAE_48410 (6)
449447.MAE_49540 (6)
449447.MAE_52620 (6)
449447.MAE_54620 (6)
449447.MAE_54990 (6)
449447.MAE_55610 (6)
449447.MAE_58080 (6)
449447.MAE_58140 (6)
449447.MAE_59350 (6)
449447.MAE_60500 (6)
4565.Traes_3B_4EFCCC882.1 (6)
4565.Traes_5BL_423673029.1 (6)
4565.Traes_5BL_45DF41500.1 (6)
4565.Traes_5BL_77F9DBF02.1 (6)
4565.Traes_5BS_A651F57B9.1 (6)
4565.Traes_5DL_11F618A4D.1 (6)

ENSEMBL ID

ENSG00000170477 (59)
ENSG00000147251 (3)
ENSG00000247315 (1)

CHEBI ID

CHEBI:28300 (5)
CHEBI:17521 (4)
CHEBI:26271 (4)
CHEBI:26986 (4)
CHEBI:16811 (4)
CHEBI:17234 (4)
CHEBI:24898 (4)
CHEBI:15428 (4)
CHEBI:28044 (4)
CHEBI:27266 (4)
CHEBI:16010 (4)
CHEBI:30769 (4)
CHEBI:17992 (3)
CHEBI:33508 (3)
CHEBI:17822 (3)
CHEBI:25094 (3)
CHEBI:18237 (3)
CHEBI:22653 (3)
CHEBI:18186 (3)
CHEBI:25017 (3)
CHEBI:16958 (3)
CHEBI:6650 (3)
CHEBI:29016 (3)
CHEBI:18012 (3)
CHEBI:18185 (2)
CHEBI:22470 (2)
CHEBI:24266 (2)
CHEBI:45658 (2)
CHEBI:22660 (2)
CHEBI:27570 (2)

Metabolite Name

Pyroglutamic acid (3)
Methionine (3)
Glutamine (3)
Leucine (2)
Glycine (2)
Glycolic acid (2)
Valine (2)
Fumaric acid (2)
Citric acid (2)
Quinic acid (2)
Arginine (2)
Glyceric acid (2)
Malic acid (2)
Asparagine (2)
Fructose (2)
Alanine (2)
Threonine (2)
Proline (2)
Phenylalanine (2)
Isoleucine (2)
Glucose (2)
Glutamic acid (2)
Aspartic acid (2)
Sucrose (2)
P-Hydroxybenzoic acid (1)
Peak_2367 (1)
Peak_2366 (1)
Peak_2365 (1)
Peak_2364 (1)
Peak_2363 (1)

First Public Date

2026 (4)
2023 (4)
2025 (3)
2014 (3)
2024 (2)
2022 (1)
2019 (1)
2017 (1)
2016 (1)
2015 (1)

Classification

bacteria (1)

Modification

-17.026549 (2)
15.994915 (2)
2x(15)N labeled L-lysine (2)
4-tetrahydrothiazine-3-carboxylic acid (2)
42.010565 (2)
57.021464 (2)
Not available (2)
-18.010565 (1)
144.105918 (1)
15.99491 (1)
4 (1)
45.029395 (1)
4x(15)N labeled L-arginine (1)
4x(2)H labeled dimethylated residue (1)
57.02146 (1)
79.966331 (1)

Study type

Transcription profiling by array (25)
Proteomic profiling by array (6)
RNA-seq of coding RNA (6)
Animal - One-color microarray (3)
ChIP-seq (2)
Cell line - One-color microarray (1)
Cell line - High-throughput sequencing (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)
Other (1)

Release Date

2020 (52)
2022 (51)
2021 (50)
2019 (46)
2025 (43)
2018 (35)
2016 (34)
2024 (34)
2023 (28)
2014 (27)
2013 (25)
2017 (24)
2015 (24)
2010 (21)
2012 (16)
2011 (13)
2009 (8)
2008 (7)
2007 (4)
2005 (2)
2026 (2)
2003 (1)
2006 (1)

Lab affiliation

USDA-ARS (9)
VetMedZg Laboratory,Faculty of Veterinary Medicine, University of Zagreb, Zagreb, Croatia Institute of Biodiversity, Animal Health & Comparative Medicine, College of Medicine, Veterinary Medicine and Life Sciences, University of Glasgow, Glasgow, UK (5)
Center for Neuroscience and Cell Biology – University of Coimbra (4)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (4)
School of Agriculture, Meiji University (4)
BK21 FOUR Community-Based Intelligent Novel Drug Discovery Education Unit, College of Pharmacy and Research Institute of Pharmaceutical Sciences, Kyungpook National University, Daegu 41566, Republic of Korea (3)
Chair of Proteomics and Bioanalytics Technical University of Munich Emil-Erlenmeyer-Forum 5 85354 Freising Germany (3)
DIMEVET Università degli Studi di Milano (3)
Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, UK (3)
VetMedZg Laboratory,Faculty of Veterinary Medicine, University of Zagreb, Zagreb, Croatia Institute of Biodiversity, Animal Health & Comparative Medicine, College of Medicine, Veterinary Medicine and Life Sciences, University of Glasgow, Glasgow, UK (3)
Abbvie Bioresearch Center (2)
Brigham Young University (2)
Center for Biotechnology and Department of Botany, Federal University of Rio Grande do Sul, Porto Alegre, P.O. Box 15005, 91501-970, Brazil (2)
College of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China (2)
College of Animal Science and Veterinary Medicine, Shenyang Agricultural University, Shenyang, China (2)
Departamento de Ciências Biológicas, Laboratório de Enzimologia e Proteômica, Universidade Federal de Ouro Preto, Brazil (2)
Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria, Australia (2)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (2)
Department of Cell Biology, Harvard Medical School, Boston MA, USA (2)
Department of Endocrinology, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China. (2)
Department of Molecular Medicine and Medical Biotechnology, University of Naples "Federico II", Italy (2)
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 50463, Republic of Korea (2)
Director of Women’s Health Research Women’s Service Line Inova Health System (2)
Institute of Agricultural Equipment, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China (2)
Institute of Bioinformatics , International Technology Park, Bangalore, India (2)
Institute of Microbiology, College of Life Sciences, Zhejiang University, China (2)
Key Laboratory of Rare and Uncommon Diseases, Department of Microbiology, Institute of Basic Medicine, Shandong First Medical University & Shandong Academy of Medical Sciences (2)
Key Laboratory of Zoonosis of Liaoning Province, College of Animal Science & Veterinary Medicine, Shenyang Agricultural University, Shenyang, P.R. China (2)
Kyungpook national university (2)
Laboratory of Membrane Biogenesis, University of Bordeaux, France (2)

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Comparative analysis of the adaptation of Staphylococcus aureus to internalization by different types of human non-professional phagocytic host cells (NMR assay)

Staphylococcus aureus is a human pathogen that can cause a wide range of diseases. Although formerly regarded as extracellular pathogen, it has been shown that S. aureus can also be internalized by host cells and persist within these cells. In the present study, we comparatively analyzed survival an...

2015-07-01 | MTBLS102 | MetaboLights

An Integrated Biochemical, Proteomics, and Metabolomics Approach for Supporting Medicinal Value of Panax ginseng Fruits (GC-MS assay)

Panax ginseng roots are well known for their medicinal properties and have been used in Korean and Chinese traditional medicines for 1000s of years. However, the medicinal value of P. ginseng fruits remain poorly characterized. Using gas chromatography-time of flight mass spectrometry (GC-TOF MS), 6...

2016-11-18 | MTBLS350 | MetaboLights

Quantitative proteomics-based analyses performed on pre-eclampsia samples in the 2004-2020 period: a systematic review.

Not available

S-EPMC7836571 | biostudies-literature

Comparative and Quantitative Global Proteomics Approaches: An Overview.

Not available

S-EPMC5302699 | biostudies-literature

Genomics and proteomics analysis

Comparative genomics and secretome proteomics uncover the molecular basis of functional divergence in soybean-associated Bacillus

PRJEB120970 | ENA

Daptomycin-Resistance Mechanisms in Clinically-Derived Staphylococcus aureus Strains Assessed by a Combined Transcriptomics and Proteomics Approach

Objectives: Development of daptomycin resistance (DAPR) in Staphylococcus aureus is associated with clinical treatment failures. Mechanism(s) of such resistance has not been clearly defined. Methods: We studied an isogenic daptomycin-susceptible (DAPS) and daptomycin-resistant (DAPR) S. aureus stra...

ORGANISM(S): Staphylococcus aureus

2011-12-02 | E-GEOD-28632 | biostudies-arrayexpress

Yeast inter-species comparative proteomics

Different yeast species in distinct clades within Saccharomycetaceae family are interesting model organisms for inter-species comparative proteomics, in regard to different metabolic properties and genomic architectures. The aim in this analysis is revealing conserved and diverse expression profile ...

ORGANISM(S): Lachancea waltii NCYC 2644

2015-11-17 | PXD001867 | Pride

Yeast inter-species comparative proteomics

ORGANISM(S): Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yeast) (Candida sphaerica)

2015-11-17 | PXD001868 | Pride

Yeast Comparative proteomics Saccharomycetaceae family

Yeast inter-species comparative proteomics

ORGANISM(S): Saccharomyces mikatae IFO 1815

2015-11-16 | PXD001866 | Pride

Yeast Comparative proteomics Saccharomycetaceae family

Yeast inter-species comparative proteomics

ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast)

2015-11-16 | PXD001865 | Pride

Yeast Comparative proteomics Saccharomycetaceae family

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1563 Results

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