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TranscriptomicsGenome-Wide Small RNA Profiling of a Soybean Seed Compartment
We report the genome-wide small RNA of soybean early maturation seed coat parenchyma compartment soybean early maturation seeds using Illumina high-throughput sequencing technology. Illumina sequencing of small RNA from early maturation seed coat parenchyma compartment and early-maturation stage who...
ORGANISM(S): Glycine max 
2011-12-22 | E-GEOD-34638 | biostudies-arrayexpress
ProteomicsFormation of a membraneless compartment regulates bacterial virulence
The RNA-binding protein CsrA regulates the expression of hundreds of genes in several bacterial species, thus controlling virulence and other processes. However, the outcome of the CsrA-mRNA interactions is modulated by competing small RNAs and other factors through mechanisms that are only partiall...
ORGANISM(S): Escherichia coli 
2025-05-07 | PXD061003 | Pride
Membraneless compartment Csrb Type iii secretion system Virulence regulation Enteropathogenic bacteria Host-pathogen interaction Enteropathogenic e. coli Srna Csra Post-transcriptional regulation 
ProteomicsIdentifying Compartment-specific Alloimmune Targets After Renal Transplantation by integrated genomics
Microarray technology has evolved as a powerful tool over the last decade, to identify biomarkers and study the mechanisms of diseases. We propose a novel application of integrated genomics by combining transcriptional levels with serological antibody profiling after kidney transplantation, with the...
ORGANISM(S): Homo sapiens 
2010-05-26 | E-GEOD-10452 | biostudies-arrayexpress
GenomicsCompartment specific mitochondrial unfolded protein response
Compartment specific mitochondrial unfolded protein response
PRJNA1395659 | ENA
ProteomicsBienertia s. chloroplast compartments replica 2 CCCP band1to10
Bienertia sinuspersici performs C4 photosynthesis without Kranz anatomy through subcellular compartmentalization of carbon fixation within individual cells. In this species, central compartment chloroplasts (C) and peripheral chloroplasts (P) collaborate with cytosolic and mitochondrial components i...
ORGANISM(S): Bienertia sinuspersici 
2019-05-14 | PXD001814 | Pride
Development Chloroplast compartment Shorgun proteomics Bienertia sinuspersicis 
ProteomicsCompartment resolved reference map from highly purified naive, activated, effector and memory CD8+ cells
Differentiation of CD8+ T lymphocytes into effector and memory cells is key for an adequate immune response and relies on complex interplay of pathways that convey signals from cell surface to nucleus. In this study, we fractionated four CD8+ T cell subtypes; naïve, recently activated effector, eff...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2016-02-29 | MSV000079540 | MassIVE
TranscriptomicsSingle cell analysis of the Common Lymphoid Progenitor compartment reveals functional and molecular heterogeneity
In order to investigate molecular events involved in the regulation of lymphoid lineage commitment, we crossed lamda5 reporter transgenic mice to mice where the GFP gene is inserted into the Rag1 locus. This allowed us to sub-fractionate common lymphoid progenitors (CLPs) and pre-pro-B cells into la...
ORGANISM(S): Mus musculus 
2009-11-24 | E-GEOD-19142 | biostudies-arrayexpress
ProteomicsDecreasing Protein Biotinylation Background in a Diatom Facilitates Proximity Labeling of the Periplastidial Compartment Proteome
Diatoms are ecologically and industrially significant microalgae, crucial for global carbon fixation and biotechnological applications. Their complex plastid membrane structures, resulting from secondary endosymbiosis, remain poorly characterized, particularly the periplastidial compartment (PPC). P...
ORGANISM(S): Homo Sapiens Oryza Sativa Nicotiana Benthamiana Nannochloropsis Oceanica Thalassiosira Pseudonana Arabidopsis Thaliana Phaeodactylum Tricornutum 
2025-03-14 | PXD061818 |
GenomicsArchaeal diversity from rhizoplane compartment of three different wetland plants
Archaeal diversity from rhizoplane compartment of three different wetland plants Metagenome
PRJNA882371 | ENA
GenomicsArchaeal diversity from rhizosphere compartment of three different wetland plants
Archaeal diversity from rhizosphere compartment of three different wetland plants Metagenome
PRJNA882260 | ENA
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