Complete submission

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Proteomics (160)
Unknown (136)
Genomics (122)
Transcriptomics (109)
Genomic (4)
Metabolomics (3)
Clinical (1)
Other (1)

Organisms

Schizosaccharomyces pombe (116)
Oryza sativa Indica Group (116)
Sinorhizobium meliloti BL225C (116)
Sus scrofa domesticus (116)
Ostreococcus tauri (116)
Saccharomyces cerevisiae (116)
Staphylococcus aureus (116)
Rattus norvegicus (116)
Escherichia coli (116)
Cyanophora paradoxa (116)
Entamoeba histolytica (116)
Physcomitrium patens (116)
Methylohalobius crimeensis 10Ki (116)
Homo sapiens (116)
Shigella flexneri (116)
Homo sapiens (81)
Caenorhabditis elegans (52)
Mus musculus (25)
Arabidopsis thaliana (5)
Saccharomyces cerevisiae (4)
Capra hircus (2)
Zea mays (2)
Rattus norvegicus (2)
Escherichia coli B (1)
Strongyloides stercoralis (1)
Propionibacterium freudenreichii subsp. shermanii (1)
Xenopus tropicalis (1)
Ectocarpus siliculosus (1)
Clostridium beijerinckii NCIMB 8052 (1)
Drosophila melanogaster (1)

Organisms

Homo sapiens (13)
Mus musculus (10)
hypersaline lake metagenome (2)
Gracilariopsis andersonii (1)
Geobacter pickeringii (1)
Glutamicibacter bergerei (1)
Geoalkalibacter subterraneus (1)
Epinephelus fuscoguttatus x Epinephelus polyphekadion (1)
Pseudomonas granadensis (1)
Chania multitudinisentens RB-25 (1)
Drosophilidae (1)
Escherichia coli W (1)
Bacillus pretiosus (1)
Amycolatopsis pretoriensis (1)
Ustilaginoidea virens botourmiavirus 10 (1)
Zymomonas mobilis subsp. mobilis (1)
Triticum monococcum (1)
Thermobifida fusca (1)
Aeromonas sp. (1)
Treponema phagedenis (1)
Spongiibacter sp. C9W (1)
Bacillus subtilis subsp. subtilis (1)
Klebsiella sp. (1)
Klebsiella (1)
Klebsiella oxytoca (1)
Pigmentiphaga sp. LT736 (1)
Morbillivirus hominis (1)
Streptococcus thermophilus (1)
Danio rerio (1)
Vibrio parahaemolyticus (1)

Repository

biostudies-arrayexpress (129)
pride (116)
ENA (81)
jPOST (29)
EGA (14)
MassIVE (14)
geo (9)
dbGaP (4)
MetaboLights (3)

Tissue

Cell culture (31)
Brain (8)
Epithelial cell (7)
Permanent cell line cell (6)
Liver (6)
Whole body (4)
Plant cell (3)
Cell suspension culture (3)
Blood plasma (3)
Leaf (3)
Kidney (3)
T cell (3)
Blood (3)
Retina (2)
Skin (2)
Blood serum (2)
Root (2)
Stem cell (2)
Photosynthetic cell (2)
Rosette (2)
Lung (2)
Chronic myeloid leukemia cell (1)
Uvea (1)
Uveal melanoma cell (1)
Tibia (1)
Peritoneal dialysis fluid (1)
Gill (1)
Bone (1)
Type II pneumocyte (1)
Prostate gland (1)

Disease

Diabetes mellitus (2)
Brain glioblastoma multiforme (2)
Lung adenocarcinoma (2)
Prostate cancer (2)
Acute leukemia (2)
Colorectal Neoplasms (1)
Tonne-Kalscheuer syndrome (1)
Multiple system atrophy (1)
Prostate cancer (1)
Uveal melanoma (1)
Tauopathy (1)
Lewy body dementia (1)
Multiple myeloma (1)
Lung cancer (1)
Melanoma (1)
Parkinson's disease (1)
Alzheimer's disease (1)
Wounds and Injuries (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (116)
Shotgun proteomics (59)
Bottom-up proteomics (20)
Affinity purification coupled with mass spectrometry proteomics (18)
Data-dependent acquisition (13)
Data-independent acquisition (10)
SWATH MS (8)
Gel-based experiment (7)
Chemical cross-linking coupled with mass spectrometry proteomics (6)
Mass spectrometry (2)
Top-down proteomics (2)
Illumina Genome Analyzer II (1)
Mass spectrometry assay (1)
Glycoproteomics (1)
All-ion fragmentation (1)

Instrument Platform

TripleTOF 5600 (7)
Illumina HiSeq 2000 (3)
Illumina NovaSeq 6000 (2)
LTQ Orbitrap Elite (2)
Orbitrap Fusion Lumos (2)
Illumina Hybridization Oven (1)
Thermal cycler, Eppendorf ThermoMixer C (1)
Promega Maxwell RSC instrument (1)
Leica microtome, 1 mm biopsy punch (1)
PromethION (1)
Illumina iScan System (1)
AB SOLiD System (1)
MinION (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
LTQ (1)
TripleTOF 5600+ (1)
LTQ Orbitrap Velos (1)
Q Exactive (1)
SYNAPT HDMS (Waters) (1)
5975C Series GC/MSD (Agilent) (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2010 (33)
2016 (32)
2011 (32)
2023 (29)
2026 (24)
2025 (20)
2021 (17)
2024 (15)
2022 (15)
2015 (13)
2012 (12)
2013 (11)
2014 (9)
2020 (9)
2018 (8)
2019 (7)
2017 (7)
2009 (3)
2007 (2)
2008 (1)
2005 (1)

CHEBI ID

CHEBI:13705 (1)
CHEBI:10696 (1)
CHEBI:33954 (1)
CHEBI:17784 (1)
CHEBI:67270 (1)
CHEBI:17266 (1)
CHEBI:17626 (1)
CHEBI:74168 (1)
CHEBI:27389 (1)
CHEBI:68428 (1)
CHEBI:22605 (1)
CHEBI:48300 (1)
CHEBI:8337 (1)
CHEBI:18344 (1)
CHEBI:24266 (1)
CHEBI:4047 (1)
CHEBI:17151 (1)
CHEBI:29888 (1)
CHEBI:17141 (1)
CHEBI:15728 (1)
CHEBI:17561 (1)
CHEBI:17712 (1)
CHEBI:16995 (1)
CHEBI:16899 (1)
CHEBI:4139 (1)
CHEBI:30852 (1)
CHEBI:17924 (1)
CHEBI:15746 (1)
CHEBI:14336 (1)
CHEBI:16610 (1)

Metabolite Name

Ribonic acid ??-lactone (1)
Unidentified_24 (1)
Unidentified_23 (1)
Unidentified_22 (1)
Unidentified_21 (1)
Unidentified_20 (1)
Unidentified_19 (1)
Unidentified_18 (1)
Unidentified_17 (1)
Unidentified_16 (1)
Unidentified_15 (1)
Unidentified_14 (1)
Unidentified_13 (1)
Unidentified_12 (1)
Unidentified_11 (1)
Unidentified_10 (1)
Unidentified_09 (1)
Unidentified_08 (1)
Unidentified_07 (1)
Unidentified_06 (1)
Unidentified_05 (1)
Unidentified_04 (1)
Unidentified_03 (1)
Unidentified_02 (1)
Unidentified_01 (1)
DL-threo-beta-Hydroxyaspartic acid (1)
5'-deoxy-5'-(methylthio)adenosine (1)
4-hydroxyquinoline-2-carboxylic acid (1)
1-methyl nicotinamide (1)
L-sorbose (1)

First Public Date

2026 (21)
2014 (13)
2025 (10)
2021 (5)
2019 (5)
2024 (4)
2023 (4)
2018 (4)
2016 (4)
2022 (3)
2015 (3)
2013 (3)
2020 (1)
2017 (1)

Classification

bacteria (10)
viruses (2)

Modification

-18.010565 (1)
-17.026549 (1)
42.010565 (1)
15.994915 (1)
57.021464 (1)

Study status

Completed (1)

Study type

Transcription profiling by array (33)
Transcription profiling by tiling array (27)
ChIP-seq (25)
RNA-seq of coding RNA (19)
Comparative genomic hybridization by array (5)
Methylation profiling by array (5)
Unknown experiment type (2)
ChIP-chip by array (2)
Other (2)
RNA-seq of non coding RNA (2)
Transcription profiling by SAGE (1)
MNase-seq (1)
ChIP-chip by tiling array (1)
Antigen profiling (1)
Exome sequencing (1)
MicroRNA profiling by array (1)
RNA-seq of coding RNA from single cells (1)
Interventional (1)

Release Date

2010 (34)
2011 (33)
2025 (24)
2016 (19)
2015 (16)
2021 (16)
2022 (14)
2013 (13)
2023 (11)
2018 (11)
2012 (10)
2017 (10)
2024 (9)
2014 (9)
2019 (9)
2020 (8)
2026 (7)
2007 (3)
2009 (2)
2005 (2)
2008 (1)
2004 (1)
2003 (1)
2002 (1)
2000 (1)

Lab affiliation

Bioplatforms Australia (9)
North Carolina State University (7)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (4)
Ruhr-Universität Bochum, Medizinisches Proteom-Center (3)
Max-Planck-Institute for Biology of Ageing Department of Mitochondrial Proteostasis Joseph-Stelzmann-Str. 9b 50931 Cologne (3)
Department of Chemistry, Imperial College London, Molecular Research Science Hub, 80 Wood Lane, London W12 0BZ, United Kingdom. The Francis Crick Institute, 1 Midland Road, London NW1 1AT, United Kingdom. (2)
Leiden University Medical Center (2)
European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Cambridge, UK (2)
Department of Archaeology, University of York, Heslington, YO10 5DD, United Kingdom (2)
Ruhr University Bochum, Medical Faculty, Medical Bioinformatics (2)
Moffitt Cancer Center Tampa, FL, USA (2)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (2)
Department of Cellular & Molecular Physiology Milton S. Hershey Medical Center Penn State College of Medicine Hershey, PA, USA (1)
Department of Cell Physiology and Metabolism, Faculty of Medicine, University of Geneva, Geneva, Switzerland (1)
Guilin Medical University, Guilin, Guangxi, China (1)
CNB/CSIC - ProteoRed (1)
Assistant Professor of Biochemistry Assistant Professor in Neurobiology Nanaline Duke Room 155 Box 3711, DUMC Durham, NC 27710 (1)
University of Minnesota, Twin-Cities, Pharmacology Department (1)
University of Minnesota, Twin-cities Pharmacology Department (1)
Assistant Professor of Biochemistry Assistant Professor of Neurobiology Nanaline Duke Room 155 Box 3711, DUMC Durham, NC 27710 (1)
Department of Immunology, Interfaculty Institute for Cell Biology, Eberhard Karls University Tübingen (1)
Shankar Balasubramanian Lab University of Cambridge (1)
The Forensic Science Unit, Faculty of Health and Life Sciences, Ellison Building, Northumbria University, Newcastle Upon Tyne, UK (1)
Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography and University of California San Diego, 9500 Gilman Dr #0204, La Jolla, CA 92093, USA (1)
Systems Biology, Proteomics, Mass Spectrometry, Bioinformatics (1)
University of Colorado, Department of Biochemistry and Molecular Genetics (1)
Department of Prehistory and Institute of Environmental Science and Technology (ICTA-UAB), Universitat Autònoma de Barcelona, Spain. (1)
Ellison Building, Northumbria University, Newcastle Upon-Tyne, NE1 8ST, UK (1)
Applied Bioinformatics, Department for Computer Science, University of Tuebingen, Sand 14, 72076 Tuebingen,Germany (1)
Max Perutz Labs Vienna, Department of Biochemistry and Cell Biology, University of Vienna, Vienna BioCenter, Austria (1)

Location

Denmark (1)
Poland (1)
Hungary (1)
Canada (1)
Austria (1)
Germany (1)
Sweden (1)
Belgium (1)
United States (1)

Keyword

Mometasone Furoate (1)
Benralizumab (1)
Benralizumab administered via accessorized pre-filled syringe (APFS) (1)
Nose diseases (1)
Respiratory tract diseases (1)
Otorhinolaryngologic diseases (1)
Polyps (1)

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MaxQuant Complete Submission: First Complete Submission in mzTab MaxQuant

This is the first MaxQuant Complete submission in mzTab and should be take as a reference for other softwares to export mzTab Complete Submissions into PRIDE Archive.

ORGANISM(S): Candida albicans (Yeast)

2018-09-28 | PXD011194 | Pride

MaxQuant DIA Complete submission

Reanalysis of submission PXD005573 using MaxQuant-DIA and MaxQuant. First complete submission in mzTab for Data independent adquisition.

ORGANISM(S): Homo sapiens (Human)

2020-08-07 | PXD020776 | Pride

Maxquant Data independent adquisition

ProteomeDiscover Crosslinking Complete Submission - HEK 293 XL fractions analysis

The following dataset is an example and gold-standard dataset of a Crosslinking (XL) Complete submission to PRIDE Archive using mzIdentML and the guidelines for XL submissions. The dataset is a HEK 293 sample analyzed with multiple fractions.

ORGANISM(S): Homo sapiens (Human)

2025-01-16 | PXD059766 | Pride

Benchmark Crosslinking

Data submission and quality in microarray-based microRNA profiling.

Not available

S-EPMC4037921 | biostudies-literature

TypeLoader2: Automated submission of novel HLA and killer-cell immunoglobulin-like receptor alleles in full length.

Not available

S-EPMC6594033 | biostudies-literature

ABRF iPRG 2023 crosslinking study - Mascot COMPLETE results

The three proteomics research groups, Proteomics (PRG), Proteome Informatics (iPRG) and Proteomics Standards (sPRG), have all held interesting studies over the years. This year (2023) the iPRG group has put together a crosslinking study. The goal is to teach people how to analyze crosslinked samples...

ORGANISM(S): Escherichia coli (strain K12)

2024-08-08 | PXD054720 | Pride

Cross-linking Abrf iprg Benchmark Crosslinking

ABRF iPRG 2023 crosslinking study - Kojak COMPLETE results

ORGANISM(S): Escherichia coli

2024-10-17 | PXD056910 | Pride

Iprg2023 Benchmark Crosslinking

Patterns in assignment submission times: Analysis of factors contributing to undergraduate students' commitment to core-curriculum related course.

Not available

S-EPMC10900937 | biostudies-literature

Direct Submission

PRJNA811247 | ENA

Geoalkalibacter subterraneus strain:Red1

Geoalkalibacter subterraneus Red1, complete genome

PRJNA263118 | ENA

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536 Results

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