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ProteomicsMaxQuant Complete Submission: First Complete Submission in mzTab MaxQuant
This is the first MaxQuant Complete submission in mzTab and should be take as a reference for other softwares to export mzTab Complete Submissions into PRIDE Archive.
ORGANISM(S): Candida albicans (Yeast) 
2018-09-28 | PXD011194 | Pride
Maxquant Complete submission Mztab 
UnknownmzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics.
Not available
S-EPMC6660005 | biostudies-literature
UnknownThe mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience.
Not available
S-EPMC4189001 | biostudies-literature
ProteomicsSample complete submission with converted mzTab file
This dataset's mzTab file was generated by our own TSV to mzTab file conversion workflow. We expect all IDs to be easily traceable back to the included MGF file, and consequently fully visualizable in the dataset's result view.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2014-10-06 | MSV000078886 | MassIVE
ProteomicsQuantitation Analysis using OpenMS of iPRG2015: Detection of Differentially Abundant Proteins in Label-Free Quantitative LC–MS/MS Experiments
The 2015 study of the Proteome Informatics Research Group (iPRG) of the Association of Biomolecular Resource Facilities (ABRF) aimed to evaluate the effects of the statistical analysis on the accuracy of the results. The study used LC–tandem mass spectra acquired from a controlled mixture, and made ...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2018-09-10 | PXD010981 | Pride
Openms Label-free Benchmark Iprg2015 Iprg study Reference dataset 
ProteomicsLC-MS/MS proteomics of Trichomonas tenax strain Hs-4 / ATCC 30207
This dataset provides bottom-up data-dependent acquisition LC-MS/MS evidence used to support the genome annotation of Trichomonas tenax strain Hs-4 (ATCC 30207). It contains one Orbitrap Elite Thermo RAW run and the corresponding mzML, mzIdentML, mzTab, native Proteome Discoverer result, exact custo...
ORGANISM(S): Trichomonas tenax 
2026-09-16 | PXD084213 | Pride
Trichomonas tenax Genome annotation Ac16wh Proteogenomics Orbitrap elite Hs-4 Bottom-up proteomics Atcc 30207 Data-dependent acquisition Lc-ms/ms 
ProteomicsMaxQuant DIA Complete submission
Reanalysis of submission PXD005573 using MaxQuant-DIA and MaxQuant. First complete submission in mzTab for Data independent adquisition.
ORGANISM(S): Homo sapiens (Human) 
2020-08-07 | PXD020776 | Pride
Maxquant Data independent adquisition 
UnknownPRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets.
Not available
S-EPMC4762524 | biostudies-literature
ProteomicsSOX9-dependent fibrosis drives renal function in nephronophthisis
Proteomics from FBXW7 knock-out IMCD-3 cell lines to identify the changes based on FBXW7 loss. FBXW7 Clone 3 and Clone 6 (listed in the results mztab file) were removed from these analysis as they were not related to this project.
ORGANISM(S): Mus musculus (Mouse) 
2025-03-25 | PXD061542 | Pride
Fbxw7 knock-out imcd-3 Kidney Nephronophthisis 
UnknownA Current Encyclopedia of Bioinformatics Tools, Data Formats and Resources for Mass Spectrometry Lipidomics.
Not available
S-EPMC9319858 | biostudies-literature
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