Cpg - OmicsDI

Show results for

Unknown (11362)
Genomics (4673)
Transcriptomics (2382)
Methylation profiling (1381)
Proteomics (191)
Other (101)
Genomic (11)
Clinical (11)
Metabolomics (5)
Models (1)

Organisms

Homo sapiens (3179)
Mus musculus (1623)
Arabidopsis thaliana (87)
Rattus norvegicus (62)
Danio rerio (35)
Gallus gallus (33)
Drosophila melanogaster (32)
Bos taurus (31)
Saccharomyces cerevisiae (25)
Macaca mulatta (15)
Sus scrofa (14)
Canis lupus familiaris (10)
Caenorhabditis elegans (9)
Apis mellifera (9)
Taeniopygia guttata (7)
Glycine max (5)
Pongo pygmaeus (4)
Camponotus floridanus (3)
Harpegnathos saltator (3)
Oryza sativa Japonica Group (3)
Pan troglodytes (3)
Sminthopsis crassicaudata (2)
Aspergillus nidulans (2)
Nasonia vitripennis (2)
Pan troglodytes troglodytes (2)
Ralstonia solanacearum UW551 (2)
Schistocerca gregaria (2)
Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 (1)
Nasonia giraulti (1)
Trichinella spiralis (1)

Organisms

Homo sapiens (1739)
Mus musculus (910)
Arabidopsis thaliana (31)
Rattus norvegicus (24)
Bos taurus (20)
Danio rerio (18)
Gallus gallus (14)
Sus scrofa (9)
Saccharomyces cerevisiae (7)
Macaca mulatta (6)
Taeniopygia guttata (5)
synthetic construct (5)
Chlamydomonas reinhardtii (4)
Drosophila melanogaster (4)
Canis lupus familiaris (4)
Solanum lycopersicum (4)
Archocentrus centrarchus (3)
Cricetulus griseus (3)
Equus caballus (3)
Oryzias latipes (3)
Rhinolophus ferrumequinum (3)
Microtus ochrogaster (2)
Diuraphis noxia (2)
Nomascus leucogenys (2)
Monodelphis domestica (2)
Heterocephalus glaber (2)
Fundulus heteroclitus (2)
Tribolium castaneum (2)
Dicentrarchus labrax (2)
Xenopus tropicalis (2)

Repository

ENA (3468)
geo (2769)
biostudies-arrayexpress (2154)
EGA (149)
PeptideAtlas (95)
pride (53)
MassIVE (20)
dbGaP (11)
iProX (8)
jPOST (8)
MetaboLights (5)
ExpressionAtlas (3)
NODE (2)
BioModels (1)

Tissue

Digestive System (95)
Cell culture (13)
Embryonic stem cell (6)
Epithelial cell (5)
Brain (4)
B cell (3)
Villi (2)
Blood (2)
Breast (2)
Kidney (2)
Liver (2)
Permanent cell line cell (2)
Bone marrow (1)
Cerebrospinal fluid (1)
Colon (1)
Colon epithelial cell (1)
Dendritic cell (1)
Embryo (1)
HEK-293T cell (1)
Hepatocyte (1)
Keratinocyte (1)
Leaf (1)
Monocyte (1)
Myoblast differentiation (1)
Pancreatic islet beta cell (1)
Primary cell (1)
Reticulocyte (1)
Skeletal muscle (1)
Skin (1)
Stem cell (1)

Disease

Normal (5)
Rett syndrome (3)
Melanoma (2)
Colorectal cancer (2)
Primary bacterial infectious disease (1)
Malignant mesothelioma (1)
Hepatocellular carcinoma-non tumorous region (1)
Breast Carcinoma (1)
Phyllodes tumor (1)
Oligodendroglioma (1)
Infiltrating ductal carcinoma (1)
Primary tumor (1)
Untreated prostate cancer (1)
Ganglioneuroblastoma (1)
Not yet visible (1)
Adrenocortical Adenoma (1)
Symptom free (1)
Osteosarcoma (1)
Colon carcinoma (1)
NGT (1)
Glioblastoma multiforme (1)
Acute myocardial infarction (1)
Bladder transitional carcinoma (1)
Temporal lobe epilepsy (1)
Cancer (1)
Non-small cell lung cancer (1)
Acute promyelocytic leukemia (1)
Gastric cancer (1)
Colorectal adenocarcinoma (1)
Prostate cancer (1)

Technology Type

Mass Spectrometry (53)
Shotgun proteomics (24)
Affinity purification coupled with mass spectrometry proteomics (15)
Bottom-up proteomics (10)
Data-independent acquisition (6)
Data-dependent acquisition (5)
DiaPASEF (4)
Illumina HiSeq 2000 (3)
Illumina Genome Analyzer II (2)
Mass spectrometry assay (2)
Mass spectrometry (2)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, HiSeq X Ten (1)
Illumina HiSeq 4000, ILLUMINA (1)
Illumina HumanMethylation450 (1)
Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina 450K, Bisulfite-Seq (1)
Illumina 450K (1)
Illumina 450k (1)
Illumina Infinium HumanMethylation450 BeadChips (1)
Illumina_450K (1)
GeneChip HTA 2.0 (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina HiSeq 2500 (1)
Complete Genomics, unspecified (1)
Unknown (1)
Illumina MiSeq (1)
Illumina HiSeq 2000, ILLUMINA (1)
NMR spectroscopy (1)

Instrument Platform

Illumina NovaSeq 6000 (36)
Illumina HiSeq 2000 (27)
Illumina HiSeq 2500 (17)
NextSeq 500 (16)
Illumina NovaSeq X (9)
NextSeq 2000 (8)
NextSeq 550 (8)
Illumina HiSeq 4000 (8)
PromethION (7)
Illumina Genome Analyzer II (7)
Illumina MiSeq (7)
Illumina HiSeq 1500 (5)
Illumina Genome Analyzer IIx (4)
GenePix 4000B [Axon Instruments] (3)
HiSeq X Ten (3)
Qubit (2)
Illumina HiSeq 3000 (2)
Institutional high-performance computing cluster (Linux-based) (1)
PCR (1)
Centrifuge (1)
Incubator, Centrifuge (1)
NovaSeq6000 (1)
Chromium 10X Genomics (1)
Element AVITI (1)
Covaris (1)
Illumina Genome Analyzer Iix (1)
Ilumina HiScan H166 (1)
Covaris S220 (LGC Genomics GmbH), Bioanalyseur 2100 (Agilent), Bravo Platform (Agilent) (1)
GenePix 4000B Microarray Scanner (Molecular Devices). (1)
Fluidic Station 450 (1)

Publication Date

2014 (608)
2013 (481)
2015 (423)
2012 (415)
2011 (332)
2016 (318)
2025 (255)
2010 (244)
2024 (224)
2020 (217)
2026 (215)
2023 (211)
2021 (197)
2017 (197)
2019 (193)
2018 (170)
2022 (168)
2009 (97)
2008 (78)
2007 (35)
2006 (11)
2005 (9)
2004 (3)
2002 (1)
2003 (1)

UNIPROT ID/AC

A0A024RC46 (95)
A0A087WTX5 (95)
A0A087WVW2 (95)
A0A087WXI0 (95)
A0A087WYL9 (95)
A0A087X130 (95)
A0A087X1V9 (95)
A0A0A0MS07 (95)
A0A0A0MS51 (95)
A0A0B4J1V0 (95)
A0A0C4DG89 (95)
A0AVT1 (95)
A0FGR8 (95)
A0FGR8-2 (95)
A0FGR8-6 (95)
A0M8Q6 (95)
A0N5G5 (95)
A1L0T0 (95)
A2BFH1 (95)
A2IPI2 (95)
A2IPI5 (95)
A2NB46 (95)
A2NKM6 (95)
A2NUT2 (95)
A2NXP9 (95)
A4F255 (95)
A5A3E0 (95)
A6NHL2 (95)
A6NNZ2 (95)
A8MTJ3 (95)

ENSEMBL ID

ENSG00000170477 (95)
ENSG00000229353 (47)
ENSG00000147251 (18)
ENSG00000176092 (2)
ENSG00000247315 (1)

CHEBI ID

CHEBI:18237 (2)
CHEBI:27570 (2)
CHEBI:18186 (2)
CHEBI:17234 (2)
CHEBI:28300 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:15428 (2)
CHEBI:28044 (2)
CHEBI:17154 (2)
CHEBI:15727 (2)
CHEBI:17568 (2)
CHEBI:27266 (2)
CHEBI:15891 (2)
CHEBI:16449 (2)
CHEBI:16704 (2)
CHEBI:18012 (2)
CHEBI:32816 (2)
CHEBI:78320 (2)
CHEBI:16919 (2)
CHEBI:17596 (2)
CHEBI:17368 (2)
CHEBI:30769 (2)
CHEBI:57306 (1)
CHEBI:89577 (1)
CHEBI:73005 (1)
CHEBI:90332 (1)
CHEBI:133225 (1)
CHEBI:70966 (1)
CHEBI:58451 (1)

Metabolite Name

Valylglycine (2)
Gamma-CEHC (2)
N-acetylcitrulline (2)
N-acetylarginine (2)
Homoarginine (2)
Gamma-glutamylglutamate (2)
Deoxycarnitine (2)
Butyrylglycine (2)
4-guanidinobutanoate (2)
Sphingosine (2)
Oleoyl ethanolamide (2)
Cytosine (2)
Cytidine (2)
Nicotinamide (2)
Taurine (2)
Oxypurinol (2)
Adenosine (2)
Linoleic acid (2)
Citrate (2)
Creatine (2)
Asparatate (1)
2-hydroxylignocerate (1)
Alpha-Pyrrolidinopentiophenone (1)
Porphyrinogen (1)
2-glyceryl-11,12-EET (1)
Stilbene (1)
Corchoionoside C (1)
N-Benzyl-9-(tetrahydro-2H-pyran-2-yl)adenine (1)
Nortrachelogenin (1)
DIGOXIN (1)

First Public Date

2014 (608)
2024 (324)
2025 (290)
2023 (260)
2026 (253)
2019 (234)
2020 (228)
2021 (217)
2017 (208)
2013 (191)
2022 (183)
2018 (181)
2015 (164)
2016 (118)
2012 (6)
2011 (3)

Modelling Approach

Ordinary differential equation model (1)

Study status

Active, not recruiting (3)
Completed (3)
Withdrawn (2)
Recruiting (2)
Enrolling by invitation (1)

Lab affiliation

Department of Cell & Developmental Biology, University of California, San Diego, CA 92093, USA. (3)
Department of Pharmaceutics, School of Pharmaceutical Sciences of Wenzhou Medical University (2)
1Department of Pharmacology, University of Colorado School of Medicine, Aurora, CO 80045, USA (1)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, 3584 CH Utrecht, the Netherlands. (1)
CNRS UMR7242, Biotechnology and Cell Signaling, University of Strasbourg, 300 Bd Sébastien Brant, 67412 Illkirch, France (1)
Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, CB2 1QR UK (1)
Cancer Epigenetics Group, Josep Carreras Leukaemia Research Institute, 08916, Badalona, Barcelona, Catalonia, Spain. (1)
Cancer Epigenetics Group, Josep Carreras Leukaemia Research Institute, 08916, Badalona, Barcelona, Catalonia, Spain (1)
Cell Biology, Gygi Lab, Harvard medical School, Boston, MA (1)
Center for Epigenetics Van Andel Research Institute Grand Rapics, Michigan 49503, USA (1)
Cleveland Clinic (1)
Clinical Proteomics Facility, Medical Biochemistry, Academic Medical Center, University of Amsterdam (1)
Department of Biochemistry and Molecular Medicine and the Norris Comprehensive Cancer Center, Keck School of Medicine, University of Southern California, Los Angeles, CA, 90089, USA (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Biology, Technical University of Darmstadt, Darmstadt, Germany (1)
Department of Cellular & Molecular Medicine, University of California, San Diego, CA 92093, USA. (1)
Department of Chemical Sciences, University of Naples “Federico II”, Via Cintia, 21 – 80126 – Naples and CEINGE Advanced Biotechnologies s.c.a r.l. “Franco Salvatore”, Via Gaetano Salvatore, 486 – 80145 - Naples (1)
Department of Chemical Sciences, University of Naples “Federico II”, Via Cintia, 21 – 80126 – Naples and CEINGE Advanced Biotechnologies s.c.a r.l. “Franco Salvatore”, Via Gaetano Salvatore, 486 – 80145 - Naples (1)
Department of Genome Regulation, Max Planck Institute for Molecular Genetics; Berlin, Germany (1)
Department of Molecular Biology and Biotechnology, Firth Court, University of Sheffield, Sheffield, UK (1)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Radboud University Nijmegen, Nijmegen, the Netherlands (1)
Department of Molecular Biomedicine. Centro de Investigaciones BiolÃ³gicas Margarita Salas. CSIC. (1)
Department of Neurology School of Medicine Oregon Health & Science University Portland, OR, USA (1)
Department of Neuroscience, Washington University School of Medicine, St. Louis, MO 63110, USA (1)
Department of Pathology and Immunology Washington University School of Medicine (1)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany (1)
Department of pathophysiology, School of Basic Medical Sciences, Wuhan University, Wuhan 430071, China (1)
EDyP (1)
Facility - Proteomics & Metabolomics (1)

Keyword

Kirsten rat sarcoma (KRAS) (2)
Neuroblastoma ras viral oncogene homolog (NRAS) (2)
Pancreatic ductal adenocarcinoma (PDAC) (2)
Vaccine therapy (2)
Circulating tumor DNA (ctDNA) (2)
Adjuvant therapy (2)
Colorectal cancer (CRC) (2)
Rectal cancer (2)
Immunotherapy (2)
Molecular biology (1)
Non-small-cell lung cancer (NSCLC) (1)
Mucinous Ovarian cancer (1)
Sessile serrated polyp (1)
Cholangiocarcinoma (CCA) (1)
Plasma (1)
Prevalence (1)
Minimal residual disease (MRD) (1)
Guadecitabine (1)
Azacitidine (1)
Blood (1)
Serum tumor biomarker (1)
Carbohydrate antigen 19-9 (CA19-9) (1)
Carcinoembryonic antigen (CEA) (1)
Biomarker (1)
Nivolumab (1)
Screening (1)

IsPrivate

False (1)

Classification

viruses (4)
helminths (1)
protozoa (1)
bacteria (1)

Modification

N6 (1)

Study type

Methylation profiling by array (598)
Transcription profiling by array (548)
Methylation profiling by high throughput sequencing (347)
ChIP-seq (250)
RNA-seq of coding RNA (197)
ChIP-chip by tiling array (35)
Other (24)
Comparative genomic hybridization by array (20)
Bisulfite-seq (17)
Unknown experiment type (16)
ChIP-chip by array (15)
DNA-seq (12)
RNA-seq of non coding RNA (12)
Cell line - High-throughput sequencing (7)
RNA-seq of coding RNA from single cells (7)
Genotyping by array (5)
MicroRNA profiling by array (5)
Human - Methylation microarray (3)
Transcription profiling by tiling array (3)
MBD-seq (3)
Transcription profiling by SAGE (2)
MeDIP-seq (2)
Human - High-throughput sequencing (2)
Human - One-color microarray (2)
RNAi profiling by array (2)
MicroRNA profiling by high throughput sequencing (2)
ATAC-seq (2)
CUT&RUN (2)
RNA-seq of total RNA (2)
Cell line - Methylation microarray (1)

Release Date

2022 (1006)
2021 (936)
2014 (933)
2020 (903)
2015 (897)
2023 (848)
2016 (827)
2019 (786)
2025 (779)
2013 (769)
2024 (732)
2017 (727)
2018 (710)
2012 (630)
2011 (503)
2010 (445)
2009 (240)
2008 (209)
2026 (132)
2007 (128)
2006 (94)
2005 (59)
2004 (51)
2002 (40)
2003 (40)
2001 (29)
2000 (24)
1999 (20)
1998 (12)
1997 (5)

Location

United States (4)
China (1)
South Korea (1)
Germany (1)
Spain (1)
Hungary (1)
Japan (1)
France (1)

Previous page
1 / 2012
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 2012
Next page

Sort by:

Relevance

Page size

Global, comparative analysis of tissue-specific promoter CpG methylation.

Understanding cell-type-specific epigenetic codes on a global level is a major challenge after the sequencing of the human genome has been completed. Here we applied methyl-CpG immunoprecipitation (MCIp) to obtain comparative methylation profiles of coding and noncoding genes in three human tissues,...

ORGANISM(S): Homo sapiens

2007-08-07 | E-GEOD-5548 | biostudies-arrayexpress

CpG islands recruit a histone H3 lysine 36 demethylase

This SuperSeries is composed of the following subset Series: GSE18588: CpG islands recruit a histone H3 lysine 36 demethylase [Illumina sequencing data] GSE21201: CpG islands recruit a histone H3 lysine 36 demethylase [Agilent data] Refer to individual Series

ORGANISM(S): Homo sapiens

2010-04-26 | E-GEOD-21202 | biostudies-arrayexpress

CpG islands recruit a histone H3 lysine 36 demethylase [Illumina sequencing data]

Eukaryotic gene expression profiles are largely defined by transcription factors that recognize specific DNA sequences in gene regulatory regions and impact RNA polymerase recruitment and transcription. In addition to specific core promoter regulatory elements, up to 70% of genes in higher eukaryote...

ORGANISM(S): Mus musculus

2010-04-27 | E-GEOD-18588 | biostudies-arrayexpress

CpG islands recruit a histone H3 lysine 36 demethylase [Agilent data]

Transcription factors that bind small DNA motifs embedded in promoters play a central role in controlling gene expression. However, in addition to these elements, up to 70% of genes in higher eukaryotes also have high levels of non-methylated cytosine/guanine base pairs (CpGs) surrounding promoters ...

ORGANISM(S): Homo sapiens

2010-05-27 | E-GEOD-21201 | biostudies-arrayexpress

The presence of RNA polymerase II, active or stalled, predicts epigenetic fate of promoter CpG islands.

Instructive mechanisms are present for induction of DNA methylation, as shown by methylation of specific CpG islands (CGIs) by specific inducers and in specific cancers. However, instructive factors involved are poorly understood, except for involvement of low transcription and trimethylation of his...

ORGANISM(S): Homo sapiens

2010-05-15 | E-GEOD-15154 | biostudies-arrayexpress

KDM2B binds CpG islands and modulates recruitment of Ring1b

CpG island elements are associated with most mammalian gene promoters, yet how they contribute to gene regulation remains poorly understood. Recently it has become clear that a subset of CpG islands in embryonic stem cells can act as polycomb response elements and are recognized by the polycomb sile...

ORGANISM(S): Mus musculus

2012-12-26 | E-GEOD-40860 | biostudies-arrayexpress

Clustering of CpG islands constitutes an important determinant of the interphase chromosome 3D organization [4C-Seq]

Using 4C-Seq experimental procedure we have characterized, in cultured chicken lymphoid and erythroid cells, genome-wide patterns of spatial contacts of several CpG islands scattered along the chromosome 14. A clear tendency for interaction of CpG islands present within the same and different chromo...

ORGANISM(S): Gallus gallus

2014-03-01 | E-GEOD-51937 | biostudies-arrayexpress

Detection of aberrant DNA methylation in acute leukemia samples compared to normal human monocytes

To globally define methylation-â€™proneâ€™ and -â€™protectedâ€™ CpG islands in leukemia, we analyzed the methylation status of 23,000 CpG islands of the human genome in eight acute leukemia samples as well as normal blood monocytes using our previously described methyl-CpG immunoprecipitation (MCIp)...

ORGANISM(S): Homo sapiens

2010-06-05 | E-GEOD-17510 | biostudies-arrayexpress

Detection of aberrant DNA methylation in AML cell lines compared to normal human monocytes

To globally define methylation-â€™proneâ€™ and -â€™protectedâ€™ CpG islands in leukemia, we analyzed the methylation status of 23,000 CpG islands of the human genome in two acute leukemia cell lines as well as normal blood monocytes using our previously described methyl-CpG immunoprecipitation (MCIp...

ORGANISM(S): Homo sapiens

2010-06-05 | E-GEOD-17455 | biostudies-arrayexpress

Detection of aberrant DNA methylation in colorectal carcinoma samples compared to normal human colon

To globally define methylation-â€™proneâ€™ and -â€™protectedâ€™ CpG islands in colorectal carcinoma we analyzed the methylation status of 23,000 CpG islands of the human genome in ten coleorectal carcinoma samples as well as normal colon using our previously described methyl-CpG immunoprecipitation ...

ORGANISM(S): Homo sapiens

2010-06-05 | E-GEOD-17512 | biostudies-arrayexpress

Previous page
1 / 2012
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 2012
Next page

Sort by:

Relevance

Page size

20119 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

ENSEMBL ID

CHEBI ID

Metabolite Name

First Public Date

Modelling Approach

Study status

Lab affiliation

Tags

Keyword

IsPrivate

Classification

Modification

Study type

Release Date

Location

OmicsDI is part of the ELIXIR infrastructure

Tweets