Crosslink - OmicsDI

Show results for

Unknown (953)
Genomics (475)
Proteomics (358)
Transcriptomics (224)
Other (12)
Metabolomics (8)
Methylation profiling (2)

Organisms

Homo sapiens (189)
Caenorhabditis elegans (186)
Mus musculus (94)
Saccharomyces cerevisiae (29)
Drosophila melanogaster (21)
Arabidopsis thaliana (15)
Apis mellifera (8)
Schizosaccharomyces pombe (8)
Escherichia coli str. K-12 substr. MG1655 (8)
Pseudomonas aeruginosa (5)
Escherichia coli (5)
Bacillus subtilis subsp. subtilis str. 168 (4)
Papio anubis (3)
Salmonella enterica subsp. enterica serovar Typhimurium (3)
Escherichia coli K-12 (2)
Candida albicans (2)
Rattus norvegicus (2)
Clostridium botulinum (1)
Salmonella enterica (1)
Pyrococcus furiosus (1)
Leishmania major (1)
Pyrococcus furiosus DSM 3638 (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028s Wu (1)
Escherichia coli ETEC H10407 (1)
Macaca mulatta (1)
Streptomyces coelicolor A3(2) (1)
Oryza sativa (1)
Saccharomyces cerevisiae S288C (1)
Heterocephalus glaber (1)
Oryza sativa Japonica Group (1)

Organisms

Homo sapiens (51)
Mus musculus (15)
Caenorhabditis elegans (5)
Saccharomyces cerevisiae (5)
Saccharolobus solfataricus (2)
Pseudomonas aeruginosa (2)
Arabidopsis thaliana (2)
Colias eurytheme (1)
Influenza A virus (A/Puerto Rico/8/1934(H1N1)) (1)
Perna viridis (1)
Schizosaccharomyces pombe (1)
Escherichia coli (1)
Plasmodium falciparum (1)
synthetic construct (1)

Repository

biostudies-arrayexpress (499)
pride (331)
ENA (119)
geo (92)
MassIVE (13)
GNPS (8)
iProX (7)
jPOST (7)
EGA (3)
GPMDB (1)

Tissue

Cell culture (57)
Brain (13)
Epithelial cell (10)
Permanent cell line cell (9)
Egg (7)
Blood (7)
Blood cell (6)
Blood plasma (5)
Kidney (5)
Liver (5)
Early embryonic cell (4)
Cell suspension culture (4)
Skin (3)
Testis (3)
Embryonic fibroblast (2)
Oocyte (2)
Plant cell (2)
Skeletal muscle (2)
HeLa cell (2)
Whole body (2)
Photosynthetic cell (2)
Leaf (2)
Fibroblast (2)
Muscle contraction (1)
Glioma cell (1)
Pancreatic endocrine cell (1)
Interstitial cell (1)
Inflammatory cell (1)
Lens nucleus (1)
Nucleate cell (1)

Disease

Disease free (6)
Non-small cell lung carcinoma (4)
Prostate cancer (2)
Plasmodium falciparum malaria (2)
Brain glioblastoma multiforme (2)
Chagas disease (2)
Cancer (2)
Influenza (2)
Alzheimer's disease (2)
Colon cancer (2)
Acute leukemia (2)
Polycystic Lipomembranous Osteodysplasia with Sclerosing Leukoencephalopathy (1)
Malignant glioma (1)
Phyllodes tumor (1)
Post-stasis (1)
Infiltrating ductal carcinoma (1)
Breast carcinoma (invasive ductal) (1)
Gastric cancer (1)
Not Available (1)
Chronic myelomonocytic leukemia (1)
Angelman syndrome (1)
Nuclear senile cataract (1)
PTEN hamartoma tumor syndrome (1)
Plasmacytoma (1)
Esophagus adenocarcinoma (1)
Ciliopathy (1)
Esophagus squamous cell carcinoma (1)
Legionnaires' disease (1)
Pancreatitis (1)
Fanconi anemia (1)

Technology Type

Mass Spectrometry (331)
Chemical cross-linking coupled with mass spectrometry proteomics (196)
Shotgun proteomics (67)
Bottom-up proteomics (58)
Affinity purification coupled with mass spectrometry proteomics (36)
Data-dependent acquisition (32)
Gel-based experiment (16)
Data-independent acquisition (8)
HDMSE (2)
SWATH MS (2)
Top-down proteomics (2)
MSE (1)
SRM/MRM (1)

Instrument Platform

NextSeq 500 (25)
Illumina HiSeq 2000 (15)
Illumina NovaSeq 6000 (9)
Q Exactive (9)
Scanning hardware (6)
Illumina Genome Analyzer II (5)
Illumina HiSeq 2500 (5)
Illumina Genome Analyzer IIx (4)
Illumina MiSeq (4)
Illumina HiSeq 4000 (4)
Axon- GenePix4000B (3)
GenePix 4000B [Axon Instruments] (3)
NextSeq 1000 (2)
Affymetrix (2)
NextSeq 2000 (2)
Illumina HiSeq 1000 (2)
Illumina HiSeq 1500 (2)
NextSeq 550 (2)
Illumina HiSeq 3000 (2)
Bio-Rad Mini-PROTEAN electrophoresis system and wet transfer cassettes, (1)
Bio-Link Crosslinker BLX-E254 (1)
Covaris M220 (1)
GeneChipR Hybridization Oven 645, GeneChip Fluidics Station 450 (1)
GeneChipR Scanner 3000 (1)
Helicos (1)
In Silico Molecular Cloning Program (1)
IPstar-compact (diagenode) (1)
Affymetrix GeneChip Scanner 3000 7G (1)
Ion Torrent PGM (1)
Instrument (1)

Publication Date

2013 (151)
2025 (63)
2026 (61)
2023 (61)
2011 (60)
2021 (58)
2019 (58)
2012 (56)
2014 (51)
2024 (49)
2017 (48)
2022 (40)
2015 (38)
2016 (29)
2020 (27)
2018 (27)
2010 (21)
2006 (18)
2008 (16)
2009 (15)
2007 (2)
2005 (2)

First Public Date

2026 (16)
2013 (13)
2024 (12)
2020 (12)
2025 (9)
2021 (9)
2014 (9)
2023 (8)
2022 (7)
2019 (6)
2017 (6)
2016 (5)
2018 (4)
2015 (2)
2010 (1)

Classification

bacteria (3)
viruses (1)
protozoa (1)

Study type

ChIP-seq (297)
Transcription profiling by array (52)
ChIP-chip by tiling array (38)
RNA-seq of coding RNA (34)
ChIP-chip by array (21)
Other (16)
CLIP-seq (8)
Hi-C (7)
Comparative genomic hybridization by array (4)
RNA-seq of non coding RNA (4)
Methylation profiling by array (3)
Unknown experiment type (2)
DNA-seq (2)
RNA-seq of total RNA (2)
CLIP-Seq (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
MicroRNA profiling by high throughput sequencing (1)
4C (1)
ATAC-seq (1)
RIP-seq (1)
CUT&RUN (1)

Release Date

2013 (176)
2023 (105)
2025 (97)
2021 (92)
2022 (90)
2020 (85)
2024 (84)
2014 (79)
2018 (77)
2015 (77)
2011 (77)
2012 (75)
2019 (73)
2017 (60)
2016 (57)
2010 (30)
2008 (28)
2009 (24)
2006 (20)
2026 (12)
2007 (8)
2005 (6)
2004 (6)
2003 (3)
2000 (3)
2002 (2)
2001 (2)
1999 (2)
1997 (1)

Lab affiliation

NCI/NIH CSB (10)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (6)
ETH Zurich, Institute of Molecular Systems Biology (5)
Institute for Systems Biology (5)
Institute For Systems Biology (4)
King's College London (4)
UHN (3)
Department of Biology, University of Konstanz, Germany (3)
University of Washington Department of Chemistry (3)
Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland (2)
Institute of Biochemistry II, Goethe University Frankfurt,Medical Faculty, Theodor-Stern-Kai 7, 60590 Frankfurt, Germany. (2)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany; Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK. (2)
Kobilka Institute of Innovative Drug Discovery, School of Medicine, The Chinese University of Hong Kong, Shenzhen, Shenzhen 518172, China. (2)
Department of Biology – Cellular Proteostasis and Mass Spectrometry, University of Konstanz (2)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA (2)
Farnusch Kaschani, Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (2)
Max-Planck Institute of Biophysics (2)
School of Basic Medical Science, Peking University, China (2)
Gene Center Munich and Department of Biochemistry, Ludwig-Maximilians-Universität München, Feodor-Lynen-Str. 25, 81377 Munich, Germany (2)
Genomics Research Center, Academia Sinica, Taipei, Taiwan (2)
MBG, Aarhus University, Denmark (2)
The Scripps Research Institute Department of Molecular Medicine (2)
Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP) (2)
European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany. (2)
University of Pennsylvania (2)
Department of Chemstry & Department of Biochemistry and Molecular Biology, University of Clagary, Canada (2)
Department of Biology, University of Konstanz, Universitätsstraße 10, 78457 Konstanz, Germany (2)
Lab Head (2)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (2)
Technische Universität Berlin, Chair of Bioanalytics, 10623 Berlin, Germany Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK Si-M/"Der Simulierte Mensch", a Science Framework of Technische Universität Berlin and Charité - Universitätsmedizin Berlin, Berlin, Germany (2)

Previous page
1 / 204
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 204
Next page

Sort by:

Relevance

Page size

Proteome-wide non-cleavable crosslink identification with MS Annika 3.0 reveals the structure of the C. elegans Box C/D complex

The field of crosslinking mass spectrometry has seen substantial advancements over the past decades, enabling the structural analysis of proteins and protein-complexes and serving as a powerful tool in protein-protein interaction studies. However, data analysis of large non-cleavable crosslink studi...

ORGANISM(S): Caenorhabditis elegans

2024-12-19 | PXD055488 | Pride

The biomechanical fundamentals of crosslink-augmentation in posterior spinal instrumentation.

Not available

S-EPMC9090827 | biostudies-literature

The cullin Rtt101 promotes ubiquitin-dependent DNA-Protein Crosslink repair across the cell cycle

PRJNA1038787 | ENA

Crosslink-Seq of Coxiella burnetii small RNA CbsR12

PRJNA522455 | ENA

Crosslink: An R Package for Network Visualization of Grouped Nodes.

Not available

S-EPMC8322777 | biostudies-literature

Dual role of PCNA-monoubiquitination in facilitating Fanconi Anemia-mediated interstrand crosslink repair

The Fanconi Anemia (FA) repair pathway governs the repair of highly genotoxic DNA interstrand crosslinks (ICLs) with the assistance of translesion synthesis (TLS), that is facilitated by site-specific monoubiquitination of PCNA (PCNA-Ub) at lysine 164 (K164). Mutation at this residue (K164R) renders...

ORGANISM(S): Mus musculus (Mouse)

2024-08-09 | PXD035337 | Pride

Lc-msms Rime Interstrand crosslink repair Mouse Dna damage tolerance Mismatch repair Fanconi anemia Pcna ubiquitination

DDRGK1 and STAT3 crosslink by BS3

Use protein mass spectrometry for detection of DDRGK1 and STAT3 crosslink by BS3

ORGANISM(S): Homo Sapiens

PXD082258 |

Radical SAM-dependent ether crosslink in daropeptide biosynthesis.

Not available

S-EPMC9055067 | biostudies-literature

Fanconi anemia DNA crosslink repair factors protect against LINE-1 retrotransposition during mouse development.

Not available

S-EPMC10584689 | biostudies-literature

Molecular mechanisms of topoisomerase 2 DNA-protein crosslink resolution.

Not available

S-EPMC6960353 | biostudies-literature

Previous page
1 / 204
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 204
Next page

Sort by:

Relevance

Page size

2033 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

First Public Date

Classification

Study type

Release Date

Lab affiliation

Tags

OmicsDI is part of the ELIXIR infrastructure

Tweets