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GenomicsVibrio salilacus strain:DSG-S6
Vibrio salilacus strain:DSG-S6 Genome sequencing and assembly
PRJNA390014 | ENA
ProteomicsInfluence of cross-linker polarity on selectivity towards lysine side chains
Even though the amine reactive BS2G and DSG cross-linkers have the same length of spacer and are based on N-hydroxysuccinimidic group, our data showed that each of them formed preferentially different cross-links. We demonstrated that the choice of cross-linker can have a significant impact on the o...
ORGANISM(S): Bos taurus (Bovine) 
2020-02-28 | PXD017299 | Pride
Structural mass spectrometry  protein structure  chemical cross-linking  disuccinimidyl glutarate  bis(sulfosuccinimidyl) glutarate  bovine serum albumin 
TranscriptomicsExpression pattern in dSG knockout mutant mice and effect of treatment with ifetroban
We sequenced RNA from left ventricle of dSG knockout and wild type mice treated with vehicle or ifetroban
ORGANISM(S): Mus musculus 
2019-02-18 | GSE96598 | GEO
UnknownRight Atrial Myxoma in a Young Patient with a DSG-2 Genetic Mutation: A Case Report.
Not available
S-EPMC12558662 | biostudies-literature
ProteomicsProhibitin cross-linked aided interactome in yeast
The mitochondrial oxidative phosphorylation system (OXPHOS) contains subunits of dual genetic origin, namely the nuclear and the mitochondrial genome. Mounting the different subunits into functional OXPHOS complexes is aided by dedicated chaperones termed assembly factors. How unfunctional or superf...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2023-08-14 | PXD039717 | Pride
Phb2 Phb1 Dsg Yeast 
GenomicsMus musculus
Expression pattern in dSG knockout mutant mice and effect of treatment with ifetroban
PRJNA379129 | ENA
TranscriptomicsTranscriptomic analysis of gene expression in diosgenin producing yeast strains
To detect the true expression patterns of diosgenin (DSG) synthetic genes after pathway engineering as well as investigate the impact of the DSG accumulation on the physiological state of yeast cells, a global analysis of the transcriptomes of DSG producing strains was performed using mRNA sequencin...
ORGANISM(S): Saccharomyces cerevisiae 
2022-08-11 | GSE182131 | GEO
GenomicsRNA-RNA interactions enable specific targeting of noncoding RNAs to nascent pre-mRNAs and chromatin sites
We developed a general method based on RNA Antisense Purification (RAP) to identify the intermolecular RNA-RNA interactions of a target RNA (RAP-RNA). RAP-RNA identifies endogenous RNA-RNA complexes through in vivo crosslinking, RNA capture with antisense oligonucleotides, and high-throughput RNA se...
ORGANISM(S): Mus musculus 
2014-09-01 | E-GEOD-55914 | biostudies-arrayexpress
ProteomicsXL-MS of Sec18 and SNAREs in S. cerevisiae
To identify what SNAREs and what residues of the SNAREs are in contact with Sec18
ORGANISM(S): Saccharomyces cerevisiae Saccharomyces cerevisiae (Baker's yeast) 
2025-04-26 | PXD062002 | Pride
Yeast Sec18 Snares 
ProteomicsProteome-wide non-cleavable crosslink identification with MS Annika 3.0 reveals the structure of the C. elegans Box C/D complex
The field of crosslinking mass spectrometry has seen substantial advancements over the past decades, enabling the structural analysis of proteins and protein-complexes and serving as a powerful tool in protein-protein interaction studies. However, data analysis of large non-cleavable crosslink studi...
ORGANISM(S): Caenorhabditis elegans 
2024-12-19 | PXD055488 | Pride
Non-cleavable C. elegans Crosslinker Dsg Crosslink Crosslinking 
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