Cryo em - OmicsDI

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Unknown (7444)
Proteomics (435)
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Transcriptomics (63)
Other (36)
Metabolomics (14)
Methylation profiling (6)

Organisms

Homo sapiens (87)
Mus musculus (41)
Saccharomyces cerevisiae (17)
Escherichia coli (11)
Escherichia coli str. K-12 substr. MG1655 (5)
Schizosaccharomyces pombe (3)
Arabidopsis thaliana (3)
Drosophila melanogaster (3)
Macaca mulatta (2)
synthetic construct (2)
Severe acute respiratory syndrome coronavirus 2 (2)
Synechococcus elongatus (1)
Powassan virus (1)
Ctenomys talarum (1)
Francisella tularensis (1)
Pyrococcus furiosus (1)
Thermococcus sp. AM4 (1)
Methanocaldococcus jannaschii (1)
Thermochaetoides thermophila (1)
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Saccharolobus solfataricus (1)
Nakaseomyces glabratus (1)
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Xenopus laevis (1)
Bacillus subtilis subsp. subtilis str. 168 (1)
Oryctolagus cuniculus (1)
Escherichia coli BW25113 (1)
'Nicotiana tabacum' yellowing phytoplasma (1)
Streptococcus pneumoniae PT8114 (1)
Bos taurus (1)

Organisms

Homo sapiens (51)
Mus musculus (30)
Saccharomyces cerevisiae (11)
Escherichia coli (6)
Escherichia coli str. K-12 substr. MG1655 (5)
Arabidopsis thaliana (3)
Schizosaccharomyces pombe (2)
Drosophila melanogaster (2)
Ctenomys talarum (1)
Pyrobaculum arsenaticum (1)
Powassan virus (1)
Thermococcus kodakarensis (1)
Synechococcus elongatus (1)
Tequatrovirus T4 (1)
Escherichia coli BW25113 (1)
Francisella tularensis (1)
Xenopus laevis (1)
Macaca fascicularis (1)
synthetic construct (1)
Bombyx mori (1)
Bacillus subtilis subsp. subtilis str. 168 (1)
Severe acute respiratory syndrome coronavirus 2 (1)

Repository

pride (361)
ENA (181)
geo (130)
MassIVE (34)
iProX (24)
jPOST (15)
MetaboLights (14)
biostudies-arrayexpress (6)
PanoramaPublic (1)

Tissue

Cell culture (45)
Epithelial cell (10)
Brain (9)
Cell suspension culture (8)
Abdominal adipose tissue (8)
Permanent cell line cell (8)
Blood plasma (4)
Kidney (4)
Whole body (3)
Photosynthetic cell (3)
Leaf (3)
Type B pancreatic cell (2)
Embryonic stem cell (2)
Skin (2)
Plant cell (2)
Heart (2)
Prokaryotic cell (2)
Embryo (2)
Fibroblast (2)
Erythrocyte (2)
Liver (2)
Blood (2)
Insect flight muscle cell (1)
K-562 cell (1)
HeLa-S3 cell (1)
Gingiva (1)
Fat cell (1)
Head (1)
Retinal pigment epithelium cell (1)
Malignant cell (1)

Disease

Alzheimer's disease (3)
Breast cancer (3)
Disease free (3)
Gerstmann-Straussler-Scheinker syndrome (2)
Type 2 diabetes mellitus (2)
Cerebral amyloid angiopathy (1)
Immunoglobulin light chain amyloidosis (1)
Cockayne syndrome (1)
Transthyretin amyloidosis (1)
Coronavirus infectious disease (1)
Toxoplasmosis (1)
Neurodegenerative disease (1)
Plasmodium falciparum malaria (1)
Spinal muscular atrophy (1)
Charcot-Marie-Tooth disease (1)
Huntington Disease (1)
Dementia (1)
Obesity (1)
Prostate cancer (1)
Neuroblastoma (1)
Autism spectrum disorder (1)
Tuberculosis (1)
Malignant neoplasm of ovary (1)

Technology Type

Mass Spectrometry (361)
Chemical cross-linking coupled with mass spectrometry proteomics (100)
Bottom-up proteomics (86)
Shotgun proteomics (78)
Data-dependent acquisition (69)
Affinity purification coupled with mass spectrometry proteomics (30)
HDMSE (19)
Gel-based experiment (19)
MSE (15)
Data-independent acquisition (14)
Top-down proteomics (10)
Mass spectrometry (9)
SWATH MS (6)
Mass spectrometry assay (3)
SRM/MRM (3)
NMR spectroscopy (2)
Glycoproteomics (2)
All-ion fragmentation (2)
RNA mass spectrometry (1)
DiaPASEF (1)

Instrument Platform

Orbitrap Fusion Lumos (9)
Liquid Chromatography MS - positive - reverse phase (7)
Orbitrap Eclipse (4)
Q Exactive HF (4)
Q Exactive (3)
Liquid Chromatography MS - negative - reverse phase (3)
MicrOTOF-Q II (2)
Orbitrap Fusion ETD (2)
LTQ Orbitrap Elite (2)
LTQ Orbitrap (2)
Bruker (2)
MS Imaging - (2)
DNBSEQ-G50 (1)
Illumina NovaSeq X (1)
X500B QTOF (Sciex) (1)
Sciex X500B QTOF (1)
Orbitrap Ascend (1)
Q Exactive UHMR (1)
LTQ (1)
LTQ Orbitrap Velos Pro (1)
Orbitrap Astral (1)
Orbitrap Exploris 480 (1)
TimsTOF Pro 2 (1)
Q Exactive Plus (1)
Direct infusion MS - positive - - Ditect Injection MS (1)
Liquid Chromatography MS (Negative) (1)
Liquid Chromatography MS (Positive) (1)
MS Imaging - positive - - Cryogenic OrbiSIMS TOF Image (1)
MS Imaging - negative - - Cryogenic OrbiSIMS Image (1)
MS Imaging - positive - - Cryogenic OrbiSIMS (1)

Publication Date

2025 (134)
2024 (105)
2026 (94)
2023 (68)
2022 (55)
2021 (42)
2020 (25)
2019 (19)
2017 (9)
2018 (6)
2016 (3)
2015 (2)
2013 (2)
2012 (2)

CHEBI ID

CHEBI:73858 (4)
CHEBI:16737 (4)
CHEBI:35038 (3)
CHEBI:75342 (3)
CHEBI:34687 (3)
CHEBI:16765 (3)
CHEBI:64489 (3)
CHEBI:28716 (3)
CHEBI:17295 (3)
CHEBI:55328 (3)
CHEBI:16015 (3)
CHEBI:28610 (3)
CHEBI:17687 (3)
CHEBI:28865 (3)
CHEBI:16359 (3)
CHEBI:30769 (3)
CHEBI:16919 (3)
CHEBI:25640 (2)
CHEBI:157871 (2)
CHEBI:20602 (2)
CHEBI:34080 (2)
CHEBI:5353 (2)
CHEBI:182695 (2)
CHEBI:143757 (2)
CHEBI:63906 (2)
CHEBI:9009 (2)
CHEBI:15430 (2)
CHEBI:44526 (2)
CHEBI:175901 (2)
CHEBI:4591 (2)

Metabolite Name

1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (3)
Taurine (3)
Dibutyl phthalate (DBP) (2)
1-Myristoyl-sn-glycero-3-phosphocholine (2)
Tris(2-butoxyethyl) phosphate (2)
Alpha-Linolenic acid (2)
Verapamil (2)
Linoleoyl ethanolamide (2)
Dioctyl phthalate (2)
Tryptamine (2)
L-Tyrosine (2)
Monoolein (2)
Indole (2)
Cholic acid (2)
Myo-Inositol (2)
Citrulline (2)
Creatinine (2)
Creatine (2)
L-Histidine (2)
L-Phenylalanine (2)
L-Glutamine (2)
Xanthine (2)
Thymidine (2)
Inosine (2)
(R)-3-hydroxybutyrate (1)
Cerium(3+) trihydride (1)
3-(4-hydroxyphenyl)-1-[2,4,6-trihydroxy-3,5-bis(3-methylbut-2-en-1-yl)phenyl]propan-1-one (1)
N-Acetyl-L-valyl-L-valyl-L-valyl-L-valyl-L-valyl-N-methyl-L-valinamide (1)
N-[(3,5-ditert-butyl-4-hydroxyphenyl)methyl]-2-dimethoxyphosphorylacetamide (1)
?D-?Xylonic acid (1)

First Public Date

2025 (47)
2024 (44)
2026 (33)
2022 (15)
2023 (13)
2020 (12)
2021 (9)
2017 (3)
2019 (2)
2018 (1)
2015 (1)
2014 (1)

Classification

bacteria (13)
viruses (3)

Modification

4 (1)

Study type

Transcription profiling by array (3)
MicroRNA profiling by high throughput sequencing (1)
Other (1)
RNA-seq of coding RNA (1)

Release Date

2025 (1177)
2024 (1071)
2023 (990)
2022 (942)
2021 (796)
2020 (653)
2019 (423)
2018 (302)
2026 (275)
2017 (223)
2016 (162)
2015 (95)
2012 (66)
2014 (65)
2013 (51)
2011 (32)
2010 (28)
2008 (28)
2009 (25)
2007 (13)
2006 (13)
2005 (6)
2004 (4)
2002 (4)
2003 (3)
2001 (1)
1998 (1)

Lab affiliation

iBET – Instituto de Biologia Experimental e Tecnológica, Av. da República, Oeiras, 2780-157, Portugal (14)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (7)
Department of Pharmacology, School of Medicine, Case Western Reserve University,cleveland,OH,USA (5)
Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China (5)
University of Pennsylvania (4)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (4)
NovAliX, Department of Biophysics, 16 Rue d’Ankara, 67000, Strasbourg, France; orcid.org/0000-0001-6229-4524 (3)
MRC - Laboratory of Molecular Biology (3)
UCSF (3)
Institute for Systems Biology (3)
1 Interdisciplinary Research Center on Biology and Chemistry, State Key Laboratory of Chemical Biology, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 201210, China 2 Shanghai Academy of Natural Sciences (SANS), Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 201210, China (2)
Department of Biochemistry, The University of British Columbia, Vancouver, Canada (2)
Department of Physiology & Biophysics, University of California, Irvine, Irvine, California, USA (2)
Institute of Molecular Biosciences, University of Graz, Graz, 8010, Austria (2)
Laboratory of Biomolecular Research, Division of Biology and Chemistry, Paul Scherrer Institute, Villigen, Switzerland; Department of Biology, Institute of Molecular Biology and Biophysics, ETH Zurich, Switzerland (2)
Structural Biology Group, European Synchrotron Radiation Facility (ESRF), Grenoble, France (2)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany; Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK. (2)
Kobilka Institute of Innovative Drug Discovery, School of Medicine, The Chinese University of Hong Kong, Shenzhen, Shenzhen 518172, China. (2)
King's College London, Chemistry Department, 7 Trinity Street, London, SE1 1DB, UK (2)
Department of Biochemistry, University of Texas Southwestern Medical Center, 5323 Harry Hines Blvd, Dallas, Texas 75390, USA (2)
Institute of Biological Chemistry, Academia Sinica, Taipei, 115201, Taiwan Institute of Biochemical Sciences, National Taiwan University, Taipei, 106319, Taiwan International Institute for Sustainability with Knotted Chiral Meta Matter (SKCM2), Hiroshima University, Hiroshima, 739-8511, Japan (2)
Department of Biochemistry and Molecular Biology School of Medicine, Oregon Health & Science University 3181 SW Sam Jackson Park Road Portland, OR 97239, USA (2)
Kobilka Institute of Innovative Drug Discovery, School ofMedicine, The Chinese University of Hong Kong, Shenzhen, China, 518172 (2)
Department of Physical and Macromolecular Chemistry, Faculty of Science, Charles University, Prague, Czech Republic (2)
ProteoToul, Institute of Pharmacology and Structural Biology (IPBS), CNRS, Toulouse (2)
Westlake University (2)
Department of Molecular Machines and Signaling, Max Planck Institute of Biochemistry, 82152, Martinsried, Germany (2)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (2)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute of Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands (2)
Erasmus MC (2)

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Cryo-EM reveals structural diversity in prolate-headed mycobacteriophage Mycofy1

Cryo-EM reveals unexpected structural diversity in prolate-headed mycobacteriophage Mycofy1

PRJEB83059 | ENA

cryo-EM Study of Human Platelet Membrane

This is the proteomic analysis data of human platelet membrane solubilized by detergent and assembled into nanodiscs then subjected to cryo-EM study.

ORGANISM(S): Homo sapiens (Human)

2025-09-29 | PXD058005 | Pride

Practices for running a research-oriented shared cryo-EM facility.

Not available

S-EPMC9521047 | biostudies-literature

Cryo-EM of dynamic protein complexes in eukaryotic DNA replication.

Not available

S-EPMC5192969 | biostudies-literature

Cryo-EM structure of SETD2/Set2 methyltransferase bound to a nucleosome containing oncohistone mutations

PRJNA623561 | ENA

Cryo-EM structures of the human Elongator complex at work

The deposited data concern the mapping of acetylation sites on wild-type and the K280A, Y363A mutants of Elp3 by LC-MS/MS. Abstract of the manuscript: tRNA modifications affect ribosomal elongation speed and co-translational folding dynamics. The Elongator complex is responsible for introducing 5-ca...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

MSV000092998 | MassIVE

In situ structure and dynamics of an alphacoronavirus spike protein by cryo-ET and cryo-EM.

Not available

S-EPMC9388967 | biostudies-literature

cryo-EM study of human liver mitochondria lysate

This is the proteomic analysis data of Human liver mitochondria lysate subjected to cryo-EM study.

ORGANISM(S): Homo sapiens (Human)

2024-01-26 | PXD044860 | Pride

Cryo-em Human liver Mitochondria

Cryo-EM structure of haemoglobin at 3.2 A determined with the Volta phase plate.

Not available

S-EPMC5497076 | biostudies-literature

Cryo-EM Structures of ALECT2 Filaments from Human Renal Biopsies

The project aims to characterize the state of disulfide bond formation in recombinant LECT2 refolded under non-reducing conditions.

ORGANISM(S): Homo Sapiens

2026-01-05 | PXD072679 |

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