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ProteomicsCTCF ChIP-MS from native chromatin in mouse embryonic stem cells (mESCs) and motor neurons (MNs)
To identify CTCF partners and co-localizing proteins from native chromatin in mESCs and MNs in endogenous conditions. The goal is to identify proteins within each sample with respect to wild-type control for each.
ORGANISM(S): Mus musculus (Mouse) 
2022-02-11 | PXD030452 | Pride
Mouse Native chromatin Ctcf chip-ms Ctcf partners Lc-ms/ms 
ProteomicsCTCF ChIP-MS from crosslinked chromatin in mouse embryonic stem cells (mESCs) and motor neurons (MNs)
To identify CTCF partners and co-localizing proteins from crosslinked chromatin in mESCs and MNs in endogenous conditions. The goal is to identify proteins within each sample with respect to wild-type control for each.
ORGANISM(S): Mus musculus (Mouse) 
2022-02-15 | PXD030543 | Pride
Mouse Crosslinked chromatin Ctcf chip-ms Ctcf partners Lc-ms/ms 
GenomicsCTCF Binding Sites by ChIP-seq from ENCODE/University of Washington
This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Richard Sandstrom mailto:sull@u.washington.edu). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:genome@soe.ucsc.edu). This tra...
ORGANISM(S): Homo sapiens 
2011-06-29 | E-GEOD-30263 | biostudies-arrayexpress
ProteomicsDynamic-network-guided CRISPRi screen identifies CTCF loop-constrained 1 nonlinear enhancer-gene regulatory activity in cell state transitions
Enhancers play key roles in gene regulation. However, comprehensive enhancer discovery is challenging because most enhancers, especially those affected in complex diseases, have weak effects on gene expression. Through gene regulatory network modeling, we identified that dynamic cell state transitio...
ORGANISM(S): Homo sapiens (Human) 
2023-06-17 | PXD043070 | Pride
Cell state Ctcf Chip-ms 
ProteomicsERCC1-XPF Cooperates with CTCF and the Cohesin to Facilitate the Developmental Silencing of Imprinted Genes
Inborn defects in DNA repairare associated with complex developmental disorders whose causal mechanisms are poorly understood. Using an in vivo biotinylation tagging approach in mice, we show that the nucleotide excision repair (NER) structure-specific endonuclease ERCC1-XPF complex interacts with t...
ORGANISM(S): Mus musculus (Mouse) 
2017-04-04 | PXD005897 | Pride
Levers Ap-ms In vivo biotinylation tagging Mouse Ner Label-free Ercc1-xpf 
TranscriptomicsCTCF-VC.BG3.LacZ_RNAi
modENCODE_submission_3673 This submission comes from a modENCODE project of Gary Karpen. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The goal of these experiments are to validate and confirm the locations of 125 chromosomal proteins across the Drosophila mel...
ORGANISM(S): Drosophila melanogaster 
2011-10-12 | E-GEOD-32783 | biostudies-arrayexpress
TranscriptomicsCTCF-VC.BG3.CTCF_RNAi
modENCODE_submission_3672 This submission comes from a modENCODE project of Gary Karpen. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The goal of these experiments are to validate and confirm the locations of 125 chromosomal proteins across the Drosophila mel...
ORGANISM(S): Drosophila melanogaster 
2011-10-12 | E-GEOD-32782 | biostudies-arrayexpress
GenomicsCTCF.14-16 hr OR embryo.Solexa
modENCODE_submission_5069 This submission comes from a modENCODE project of Gary Karpen. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We aim to determine the locations of 125 chromosomal proteins across the Drosophila melanogaster genome. The proteins under s...
ORGANISM(S): Drosophila melanogaster 
2013-05-28 | E-GEOD-47264 | biostudies-arrayexpress
TranscriptomicsCTCF-VC.BG3.CP190_RNAi
modENCODE_submission_3671 This submission comes from a modENCODE project of Gary Karpen. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The goal of these experiments are to validate and confirm the locations of 125 chromosomal proteins across the Drosophila mel...
ORGANISM(S): Drosophila melanogaster 
2011-10-12 | E-GEOD-32781 | biostudies-arrayexpress
TranscriptomicsCTCF.2-4 hr OR embryo.Affy 2
modENCODE_submission_5057 This submission comes from a modENCODE project of Gary Karpen. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We aim to determine the locations of 125 chromosomal proteins across the Drosophila melanogaster genome. The proteins under s...
ORGANISM(S): Drosophila melanogaster 
2013-03-13 | E-GEOD-45068 | biostudies-arrayexpress
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