Cullen M M - OmicsDI

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Unknown (751)
Transcriptomics (37)
Proteomics (24)
Genomics (6)
Metabolomics (1)

Organisms

Schizophyllum commune H4-8 (23)
Mycobacterium tuberculosis SP7 (23)
Oryza sativa Japonica Group (23)
Crotalus durissus terrificus (23)
Eriocheir sinensis (23)
Candidatus Endoriftia persephonae (23)
Mycobacterium tuberculosis SP10 (23)
Mycobacterium tuberculosis SP13 (23)
Mycobacterium tuberculosis SP22 (23)
Enterobacter ludwigii (23)
Chlamydomonas reinhardtii (23)
Lama (23)
Pyricularia oryzae P131 (23)
Enterococcus mundtii CRL35 (23)
Pongo pygmaeus (23)
Oncorhynchus tshawytscha (23)
Pseudomonas canadensis (23)
Strongylocentrotus purpuratus (23)
Influenza A virus (A/California/04/2009(H1N1)) (23)
Salmonella enterica subsp. enterica serovar Typhimurium (23)
Homo sapiens (15)
Mus musculus (6)
Pseudomonas aeruginosa (3)
Wolfiporia cocos (1)
Phlebiopsis gigantea (1)
Bos taurus (1)
Canis lupus familiaris (1)
Gallus gallus (1)
Saccharomyces cerevisiae (1)
Rattus norvegicus (1)

Organisms

Pseudomonas aeruginosa (2)

Repository

biostudies-arrayexpress (41)
pride (23)
ENA (2)
MassIVE (1)
MetaboLights (1)

Tissue

Cell suspension culture (6)
Extracellular matrix (5)
Cell culture (4)
Extracellular space (2)
Oocyte (2)
Brain (2)
HeLa cell (2)
T cell (2)
Basidiospore (1)
Culture fluid (1)
Primary neuron (1)
Permanent cell line cell (1)
Epithelial cell (1)

Disease

Disease free (1)

Technology Type

Mass Spectrometry (23)
Shotgun proteomics (15)
Bottom-up proteomics (3)
Affinity purification coupled with mass spectrometry proteomics (3)
Mass spectrometry (1)
SWATH MS (1)
Gel-based experiment (1)
Data-dependent acquisition (1)

Instrument Platform

DNBSEQ-G400 (1)
Illumina HiSeq 2500 (1)
Orbitrap Fusion Lumos (1)
Liquid Chromatography MS – negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2014 (9)
2012 (9)
2023 (7)
2011 (6)
2021 (4)
2009 (4)
2022 (4)
2015 (3)
2007 (3)
2026 (2)
2010 (2)
2024 (2)
2025 (2)
2020 (2)
2018 (2)
2016 (1)
2013 (1)
2004 (1)
2017 (1)

CHEBI ID

CHEBI:180663 (1)
CHEBI:48863 (1)
CHEBI:24346 (1)
CHEBI:27082 (1)
CHEBI:30764 (1)
CHEBI:142440 (1)
CHEBI:33283 (1)
CHEBI:47571 (1)
CHEBI:28009 (1)
CHEBI:30860 (1)
CHEBI:16488 (1)
CHEBI:69061 (1)
CHEBI:16892 (1)
CHEBI:50385 (1)
CHEBI:17315 (1)
CHEBI:28915 (1)
CHEBI:16457 (1)
CHEBI:50678 (1)
CHEBI:21260 (1)
CHEBI:17439 (1)
CHEBI:15573 (1)
CHEBI:44549 (1)
CHEBI:44111 (1)
CHEBI:15925 (1)
CHEBI:18026 (1)
CHEBI:77267 (1)
CHEBI:28997 (1)
CHEBI:37574 (1)
CHEBI:84415 (1)
CHEBI:30754 (1)

Metabolite Name

15-oxo prostaglandin F2alpha (1)
3'-deoxyguanosine (1)
3,3-dimethyl-2-oxobutanoic acid (1)
Phosphoglyceric acid (1)
2-deoxyguanosine (1)
N-acetyl glutamic acid (1)
3-hydroxybenzoic acid (1)
Prostaglandin A2 (1)
Prostaglandin F2alpha (1)
Prostaglandin E2 (1)
Prostaglandin D2 (1)
Alpha-ketoglutaric acid (1)
Dihydroxyacetone phosphate (1)
4-methyl-2-oxopentanoic acid (1)
Syringic acid (1)
S-(5'-adenosyl)-L-homocysteine (1)
O-phospho-L-homoserine (1)
Pantothenic acid (1)
Orotic acid (1)
N-acetyl-D-glucosamine 6-phosphate (1)
Methylmalonic acid (1)
Isethionic acid (1)
Inosine 5'-monophosphate (1)
Glyphosate (1)
Glutamic acid (1)
Fructose 6-phosphate (1)
D-fructose 1,6-bisphosphate (1)
Fosfomycin (1)
Desthiobiotin (1)
Cysteate (1)

First Public Date

2014 (2)

Classification

bacteria (2)

Study type

Transcription profiling by array (18)
RNA-seq of coding RNA (11)
RNA-seq of non coding RNA (4)
ChIP-seq (3)
Unknown experiment type (2)
Genotyping by array (1)
Other (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2023 (92)
2025 (83)
2021 (80)
2022 (78)
2024 (62)
2019 (58)
2020 (50)
2016 (44)
2018 (43)
2014 (31)
2017 (30)
2015 (25)
2012 (20)
2011 (20)
2009 (17)
2026 (13)
2013 (13)
2010 (8)
2008 (5)
2007 (4)
2006 (4)
2003 (4)
2004 (2)
2005 (2)
2002 (2)
2000 (1)
1999 (1)

Lab affiliation

Forest Products Laboratory, Institute for Microbial and Biochemical Sciences, USDA (5)
Institute for Microbial and Biochemical Sciences, USDA Forest Products Laboratory, Madison, WI (2)
School of Biochemistry Faculty of Life Sciences University of Bristol (2)
Cullen Laboratory School of Biochemistry University of Bristol, UK (1)
University of Bristol, School of Biochemistry (1)
Department of Microbiology and Immunology, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA (1)
WCCB,University of Edinburgh (1)
Department of Biochemistry and Pharmacology, The Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Parkville, Victoria, 3052, Australia. (1)
Institute for Microbial and Biochemical Sciences, Forest Products Laboratory, U.S. Department of Agriculture (1)
Institute for Microbial and Biochemical Sciences, USDA Forest Products Laboratory, Madison WI (1)
Jiangsu Academy of Agricultural Sciences (1)
Maynooth University (1)
Laboratory of Neuroepigenetics, University of Zürich/Swiss Federal Institute of Technology, Brain Research Institute, Neuroscience Center Zürich, Winterthurerstrasse 190, Zürich CH-8057, Switzerland (1)
Telethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Italy. Department of Translational Medicine, University of Naples "Federico II", Italy. Department of Molecular and Human Genetics, Baylor College of Medicine, Jan and Dan Duncan Neurological Research Institute, Houston, TX, USA. (1)
Wellcome Centre for Cell biology, University of Edinburgh, UK (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich (TUM), Freising, Germany (1)
University of Bristol (1)

Tags

pathogen (2)
pathogen:bacterium (2)
xref:PubMed:21696457 (1)
xref:PubMed:22931250 (1)

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Posttranscriptional m(6)A Editing of HIV-1 mRNAs Enhances Viral Gene Expression.

Not available

S-EPMC4867121 | biostudies-literature

Bakuchiol from Cullen corylifolium and its efficacy on apoptosis and autophagy in HepG2 cells.

Not available

S-EPMC11664279 | biostudies-literature

Microcolony formation by the opportunistic pathogen Pseudomonas aeruginosa requires pyruvate and pyruvate fermentation.

A hallmark of the biofilm architecture is the presence of microcolonies. However, little is known about the underlying mechanisms governing microcolony formation. In the human pathogen Pseudomonas aeruginosa, microcolony formation is dependent on the two-component regulator MifR, with mifR mutant bi...

ORGANISM(S): Pseudomonas aeruginosa

2012-04-30 | E-GEOD-35286 | biostudies-arrayexpress

Lignocellulose-induced regulation of Phanaerochaete chrysosporium genes

Transcript profiles of Phanerochaete chrysosporium grown on ball-milled aspen or ball-milled pine were analyzed. Array design based on the DoE's Joint Genome Institute's v2.1 annotation. Goal is to define genes involved in lignocellulose degradation. From a data set of 10,004 unique alleles, each Ro...

ORGANISM(S): Phanerochaete chrysosporium

2011-06-02 | E-GEOD-27941 | biostudies-arrayexpress

Pseudomonas aeruginosa two-component regulator BfmR controls bacteriophage lysis and DNA release during biofilm development through PhdA

Biofilms are surface-adhered bacterial communities encased in an extracellular matrix composed of polysaccharides, proteins, and extracelluar (e)DNA, with eDNA being required for the formation and integrity of biofilms. Here we demonstrate that the spatial and temporal release of eDNA is regulated b...

ORGANISM(S): Pseudomonas aeruginosa

2011-06-01 | E-GEOD-28953 | biostudies-arrayexpress

Nutrient limitation-induced regulation of Phanaerochaete chrysosporium genes

Transcript profiles of Phanerochaete chrysosporium grown on carbon-limited medium, nitrogen-limited medium and replete medium. Array design based on the DoE's Joint Genome Institute's v2.1 annotation. Goal is to define genes involved in lignin degradation. Keywords: gene expression under three diff...

ORGANISM(S): Phanerochaete chrysosporium

2009-03-30 | E-GEOD-14735 | biostudies-arrayexpress

Cellulose-induced regulation of Phanaerochaete chrysosporium genes

Transcript profiles of Phanerochaete chrysosporium grown on different substrates were analyzed. Array design based on the DoE's Joint Genome Institute's v2.1 annotation. Goal is to define genes involved in cellulose degradation. Keywords: gene expression under different culture conditions From a da...

ORGANISM(S): Phanerochaete chrysosporium

2009-03-30 | E-GEOD-14734 | biostudies-arrayexpress

Transcription profiling of P. aeruginosa glutamate mediated biofilm dispersion

Effect of glutamate mediated dispersion of Pseudomonas aeruginosa PAO1 from a biofilm.

ORGANISM(S): Pseudomonas aeruginosa

2004-07-10 | E-MEXP-87 | biostudies-arrayexpress

Altered methylation of specific DNA loci in the liver of Bhmt-null mice results in repression of Iqgap2 and F2rl2 and is associated with development of preneoplastic foci.

Not available

S-EPMC5388550 | biostudies-literature

The ability of GAP1IP4BP to function as a Rap1 GTPase-activating protein (GAP) requires its Ras GAP-related domain and an arginine finger rather than an asparagine thumb.

Not available

S-EPMC2704752 | biostudies-literature