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TranscriptomicsTranscriptional comparison of the filamentous fungus Neurospora crassa growing on three major monosaccharides D-glucose, D-xylose and L-arabinose
D-glucose, D-xylose and L-arabinose are three major monosaccharides in the plant cell wall. Complete utilization of all three sugars is still a bottleneck for second-generation cellulolytic bioethanol production, especially for L-arabinose. However, little is known about the gene expression profiles...
ORGANISM(S): Neurospora crassa 
2014-03-17 | E-GEOD-51091 | biostudies-arrayexpress
TranscriptomicsDetermination of variability of fermentor-grown Aspergillus niger
Knowledge of the biological and technical variation for fermentor-grown Aspergillus niger cultures is needed to design DNA microarray experiments properly. We cultured A. niger in batch-operated fermentor vessels and induced with D-xylose. Transcript profiles were followed in detail by qPCR for 8 ge...
ORGANISM(S): Aspergillus niger 
2008-12-30 | E-GEOD-11405 | biostudies-arrayexpress
GenomicsD-xylose catabolic pathways expressed in Herbaspirillum seropedicae
D-xylose catabolic pathways expressed in Herbaspirillum seropedicae
PRJNA681857 | ENA
TranscriptomicsD-xylose catabolic pathways expressed in Herbaspirillum seropedicae
Herbaspirillum seropedicae are β-proteobacteria that establish as endophytes in various plants. They are able to consume diverse carbon sources, including hexoses and pentoses like D-xylose. D-xylose catabolism pathways have been described in some microorganisms, but databases of genes involved in t...
ORGANISM(S): Herbaspirillum seropedicae 
2021-03-01 | GSE162430 | GEO
GenomicsWeimberg pathway an alternative for utilization of D-xylose for Myceliophthora thermophila
Weimberg pathway an alternative for utilization of D-xylose for Myceliophthora thermophila
PRJNA883600 | ENA
TranscriptomicsTranscription profiling of S. cerevisiae xylose metabolism mutants grown on glucose and xylose under aerobic and anaerobic conditions
Response of Saccharomyces cerevisiae engineered for xylose metabolism to changes in carbon source and aeration
ORGANISM(S): Saccharomyces cerevisiae 
2007-07-07 | E-GEOD-835 | biostudies-arrayexpress
TranscriptomicsWeimberg pathway an alternative for utilization of D-xylose for Myceliophthora thermophila
An alternative for utilization of D-xylose, the non-phosphorylative Weimberg pathway was established in M. thermophila. Changes in transcript levels were surveyed in mutants. Transcriptome analysis revealed that the D-xylose dehydrogenase gene was significantly upregulated after deletion of D-xylose...
ORGANISM(S): Thermothelomyces thermophilus ATCC 42464 
2023-02-01 | GSE214002 | GEO
TranscriptomicsTranscription profiling by array of Clostridium acetobutylicum on glucose and xylose substrates under exponential, continuous and diauxie growth.
Clostridium acetobutylicum was grown in a batch-culture with minimal medium containing glucose and xylose as substrate. Diauxie growth was observed after glucose was consumed. Following the organism grows on xylose. Transcriptional analysis was done to pursue the cellular processes during the switch...
ORGANISM(S): Clostridium acetobutylicum 
2010-09-30 | E-MEXP-2613 | biostudies-arrayexpress
ProteomicsThe chimeric GaaR::XlnR transcription factor induces pectinolytic activities in the presence of D-xylose in Aspergillus niger
Aspergillus niger is a filamentous fungus well known for its ability to produce a wide variety of pectinolytic enzymes, which have many applications in the industry. The transcriptional activator GaaR is induced by 2-keto-3-deoxy-L-galactonate, a compound derived from D-galacturonic acid, and plays ...
ORGANISM(S): Aspergillus niger NRRL3 
2021-11-18 | PXD025383 | Pride
Aspergillus niger Chimeric transcription factor D-xylose Crispr/cas9 Pectinases 
TranscriptomicsTranscriptional comparison of the filamentous fungus Neurospora crassa growing on three major monosaccharides D-glucose, D-xylose and L-arabinose
D-glucose, D-xylose and L-arabinose are three major monosaccharides in the plant cell wall. Complete utilization of all three sugars is still a bottleneck for second-generation cellulolytic bioethanol production, especially for L-arabinose. However, little is known about the gene expression profiles...
ORGANISM(S): Neurospora crassa 
2014-03-17 | GSE51091 | GEO
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