Da Silva D D - OmicsDI

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Unknown (3593)
Proteomics (116)
Transcriptomics (51)
Metabolomics (20)
Genomics (11)
Other (4)
Models (2)

Organisms

Bombyx mori (104)
Onchocerca volvulus (104)
Klebsiella pneumoniae (104)
Musca domestica (104)
Brugia malayi (104)
Schizosaccharomyces pombe (104)
Cnidaria (104)
Streptomyces coelicolor A3(2) (104)
Sus scrofa (104)
Human immunodeficiency virus 1 (104)
Oryza sativa Indica Group (104)
Sinorhizobium meliloti BL225C (104)
Vitis (104)
Sus scrofa domesticus (104)
Ostreococcus tauri (104)
Saccharomyces cerevisiae (104)
Synechocystis sp. PCC 6803 (104)
Homo sapiens (35)
Mus musculus (9)
Xylella fastidiosa (5)
Rattus norvegicus (4)
Ectocarpus siliculosus (2)
Trypanosoma cruzi (2)
Leptobalanus humilis (2)
Alnus glutinosa (1)
Zea mays (1)
Vitis vinifera (1)
Sus scrofa (1)
Rhipicephalus haemaphysaloides (1)
Orchidaceae (1)

Repository

pride (104)
biostudies-arrayexpress (51)
MassIVE (15)
MetaboLights (12)
EGA (10)
GNPS (8)
BioModels (2)
iProX (1)
ENA (1)

Tissue

Cell culture (21)
Plant cell (8)
Brain (7)
Liver (7)
Epithelial cell (6)
Blood plasma (5)
Blood serum (4)
Pancreas (3)
Skin (3)
Root (3)
Kidney (3)
Colon (3)
Venom gland (2)
Venom (2)
Hippocampus (2)
Cerebrospinal fluid (2)
Bone marrow (2)
Heart (2)
Skeletal muscle (2)
Stem cell (2)
Leaf (2)
Primary cell (2)
Monocyte (2)
Nectar (1)
Somatic embryo (1)
Blood-lymph (1)
Bile duct (1)
Neural tissue (1)
Uveal melanoma cell (1)
Regular cardiac myocyte (1)

Disease

Disease free (5)
COVID-19 (4)
Prostate adenocarcinoma (3)
Neuroblastoma (2)
Stomach cancer (2)
Neurodegenerative disease (2)
Pancreatic ductal adenocarcinoma (2)
Melanoma (2)
Type 2 diabetes mellitus (2)
Breast cancer (2)
Gray platelet syndrome (2)
Colon cancer (2)
N/a (1)
Developmental and epileptic encephalopathy 9 (1)
Becker muscular dystrophy (1)
Status epilepticus (1)
Synovial sarcoma (1)
Embryonal rhabdomyosarcoma (1)
Renal Wilms' tumor (1)
Uveal melanoma (1)
Peripheral primitive neuroectodermal tumor (1)
Fibrosarcoma (1)
Head and neck cancer (1)
Primary sclerosing cholangitis (1)
Progeria (1)
Malignant mesothelioma (1)
Polycystic Kidney (1)
Chronic bronchitis (1)
Skin melanoma (1)
Frontotemporal dementia (1)

Technology Type

Mass Spectrometry (104)
Shotgun proteomics (68)
Bottom-up proteomics (16)
Mass spectrometry (12)
HDMSE (8)
Affinity purification coupled with mass spectrometry proteomics (8)
Gel-based experiment (7)
Data-independent acquisition (6)
SWATH MS (5)
Data-dependent acquisition (5)
SRM/MRM (2)
Illumina CytoSNP, Illumina HumanOmni2.5, ILLUMINA, Illumina 450k, Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
Affinity proteomics (1)
Top-down proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (8)
Liquid Chromatography MS - negative - reverse phase (6)
Amazon SL (Bruker Daltonics amaZon series) (3)
LTQ Orbitrap Elite (3)
Illumina NovaSeq 6000 (2)
6560 Q-TOF LC/MS (2)
6520A Quadrupole Time-of-Flight LC/MS (2)
Xevo G2 Q-Tof (2)
Q Exactive Plus (2)
Scanning hardware (1)
NextSeq 2000 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
LTQ Orbitrap XL (1)
MaXis (1)
Q Exactive (1)
Q-Tof Premier (1)
Impact II QToF Bruker Daltonics (1)
Xevo G2-S QTof (1)
LTQ Orbitrap XL ETD (1)
Q-Exactive (1)
LTQ XL (1)
TripleTOF 5600 (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Gas Chromatography MS - positive (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2022 (30)
2025 (21)
2024 (19)
2020 (14)
2023 (12)
2010 (11)
2018 (11)
2021 (11)
2026 (10)
2019 (10)
2016 (8)
2013 (6)
2017 (5)
2015 (4)
2014 (4)
2007 (4)
2011 (3)
2012 (2)
2009 (2)
2008 (1)
2006 (1)
2004 (1)
2003 (1)

CHEBI ID

CHEBI:24875 (2)
CHEBI:50202 (2)
CHEBI:23053 (2)
CHEBI:42255 (2)
CHEBI:16243 (2)
CHEBI:6650 (2)
CHEBI:17620 (2)
CHEBI:16235 (2)
CHEBI:15843 (2)
CHEBI:17712 (2)
CHEBI:30769 (2)
CHEBI:18248 (1)
CHEBI:190293 (1)
CHEBI:63709 (1)
CHEBI:190292 (1)
CHEBI:145104 (1)
CHEBI:145103 (1)
CHEBI:145102 (1)
CHEBI:145101 (1)
CHEBI:145100 (1)
CHEBI:145098 (1)
CHEBI:145099 (1)
CHEBI:145097 (1)
CHEBI:145095 (1)
CHEBI:145093 (1)
CHEBI:145092 (1)
CHEBI:49274 (1)
CHEBI:74463 (1)
CHEBI:80897 (1)
CHEBI:139424 (1)

Metabolite Name

4-Allyl-1,2-diacetoxybenzene (1)
Chavibetol acetate (1)
Chavibetol (1)
Chavicol acetate (1)
Methyl chavicol (1)
15-hydroxy-eremantholide B (1)
Viguilenin (1)
1b,2a-epoxy tagitinin C (1)
Flavonol 3-o-glycosylated (1)
Pinocembrin (1)
2-oxo-8b-methacryloyloxy-guaia-3,10(14),11(13)-trien-6a,12-olide (1)
Galangin (1)
Genkwanin (1)
3,4',5-trihydroxy-7-methoxyflavone (1)
15-hydroxy-eremantholide b (1)
Hispidulin (1)
3,4,5-tri-O-E-caffeoylquinic acid (1)
Hirsutinolide (1)
3-O-caffeoyl-2-(2-butyl)-2-hydroxybutanedioic acid (1)
Budlein B (1)
4,5-di-O-E-caffeoylquinic acid (1)
3,4-di-O-E-caffeoylquinic acid (1)
Apigenin-7-O-glucoside (1)
Spiraeoside (1)
3,5-di-O-E-caffeoylquinic acid (1)
3-O-caffeoyl-2-(2-propyl)-2-hydroxybutanedioic acid (1)
1,5-di-O-E-caffeoylquinic acid (1)
Kaempferol-3-O-rutinoside (1)
Kaempferol-3-O-glucoside (1)
Quercetin-3-O-glucoronoside (1)

IsPrivate

False (2)

First Public Date

2025 (1)

Modelling Approach

Ordinary differential equation model (2)

Modification

43.00581 (1)
4x(2)H labeled dimethylated residue (1)
57.02146 (1)
0.984 (1)
15.99491 (1)

Study type

Transcription profiling by array (36)
RNA-seq of coding RNA (5)
Unknown experiment type (2)
Transcription profiling by SAGE (1)
Transcription profiling by tiling array (1)
Genotyping by array (1)
Comparative genomic hybridization by array (1)
ATAC-seq (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (505)
2025 (461)
2023 (447)
2021 (440)
2024 (366)
2020 (287)
2019 (209)
2018 (188)
2017 (161)
2016 (122)
2015 (100)
2026 (75)
2014 (75)
2013 (61)
2010 (32)
2012 (31)
2011 (27)
2008 (17)
2009 (15)
2007 (8)
2003 (5)
2004 (3)
2006 (2)
2005 (2)
2002 (2)
2001 (2)
2000 (1)

Lab affiliation

Federal University of Uberlandia (3)
Unidade Proteômica, Departamento de Bioquímica, Instituto de Química, Universidade Federal do Rio de Janeiro; Laboratório de Proteômica (LabProt), LADETEC, Instituto de Química, Universidade Federal do Rio de Janeiro; Centro de Pesquisa em Medicina de Precisão, Instituto de Biofísica Carlos Chagas Filho, Universidade Federal do Rio de Janeiro (2)
Diabetes and Circadian Rhythms Department, Nestlé Institute of Health Sciences, CH-1015 Lausanne, Switzerland (2)
The University of Melbourne (2)
Centre of Excellence in New Target Discovery (CENTD), Butantan Institute, Sao Paulo, Brazil. (1)
Laboratory of Cell Growth Control by Nutrients, Inserm U1151, Necker Enfants Malades Institute (INEM), Faculté de Médecine Paris Descartes, Leriche Building 14 Rue Maria Helena Vieira da Silva Paris 75014 France (1)
Iowa State University - Department of Biochemistry Biophysics and Molecular Biology (1)
Universidade Federal do Paraná (1)
Professor at UINCAMP-BR Campinas State University - São Paulo - Brazil (1)
Head of the Curie Institute Mass Spectrometry Platform (LSMP) (1)
federal university of rio de janeiro (1)
Professor i molekylærbiologi og faglig leder av PROMEC Institutt for klinisk og molekylær medisin Fakultet for medisin og helsevitenskap geir.slupphaug@ntnu.no 72573076 91825455 Laboratoriesenteret, 231.05.034, Øya, Erling Skjalgssons g 1 (1)
Microenvironment and Metastasis Laboratory, Molecular Oncology Programme, Spanish National Cancer Research Center (CNIO), Madrid, Spain. (1)
REQUIMTE-LAQV, DEP. DE QUÍMICA E BIOQUÍMICA, FACULDADE DE CIÊNCIAS DA UNIVERSIDADE DO PORTO, RUA DO CAMPO ALEGRE, S/N, 4169-007 PORTO (PORTUGAL) (1)
Center for Genomics and Systems Biology Department of Biology New York University, New York, NY, 10003, USA (1)
University of Melbourne, Melbourne, Australia (1)
CCMAR (Center of Marine Sciences, Universidade do Algarve,Campus de Gambelas, Portugal (1)
CCMAR (Center of Marine Sciences), Universidade do Algarve,Campus de Gambelas, Portugal (1)
Stoller Biomarker Discovery Centre, University of Manchester, United kingdom (1)
Faculty of Biology,Molecular Plant Physiology, Universit of Freiburg,Schänzlestr. 1, 79104 Freiburg¸Germany (1)
Department of Biochemistry, Escola Paulista de Medicina, Federal University of São Paulo, (EPM/UNIFESP), São Paulo, SP, Brazil. (1)
Glycoproteomics Lab, Parasitology department, Institute of Biomedical Sciences of University of São Paulo, Brazil. (1)
1. Garvan Institute of Medical Research, Cancer Ecosystems Program, and The Kinghorn Cancer Centre, Darlinghurst, Sydney, New South Wales, Australia. 2. School of Clinical Medicine, Faculty of Medicine and Health, University of New South Wales (UNSW), Kensington, Sydney, New South Wales, Australia. (1)
NMS, CEDOC, NOVA University Lisbon, Portugal (1)
Biological Sciences, The University of Texas at El Paso (1)
1VIB Center for Medical Biotechnology, VIB, Ghent, 9052, Belgium 2Department of Biomolecular Medicine, Ghent University, Ghent, 9052, Belgium (1)
University of Pittsburgh, Department of Biological Sciences (1)
Grupo de Proteómica-PBR2-ProteoRed/ISCIII-Grupo de Investigación de Reumatología (GIR), Instituto de Investigación Biomédica de A Coruña (INIBIC), Complexo Hospitalario Universitario de A Coruña (CHUAC), Sergas. Universidade da Coruña, A Coruña, Spain. (1)
IHU Mediterranee infection (1)
Functional Proteomics Laboratory, Department of Science and Technology, Federal University of São Paulo, São José dos Campos, SP, Brazil (1)

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Genomic Detection of the Emerging, Highly Pathogenic HIV-1 Subtype D in Bahia, Northeast Brazil.

Not available

S-EPMC10458544 | biostudies-literature

Serum Levels of Vitamin D and Dental Caries in 7-Year-Old Children in Porto Metropolitan Area.

Not available

S-EPMC7825719 | biostudies-literature

D-(+)-Galactose-induced aging: A novel experimental model of erectile dysfunction.

Not available

S-EPMC8049229 | biostudies-literature

Symptomatic Correlates of Vitamin D Deficiency in First-Episode Psychosis.

Not available

S-EPMC6521317 | biostudies-literature

Mass spectrometry based quantitative proteome analyses for the import mutants ppi2 and tic56-1 as well as for spectinomycin treated Arabidopsis thalian plants

We acquired quantitative proteomics data from eight week old ppi2 and tic56-1 mutants as well as from wild type treated with 60 µg/ml spectinomycin and related them to their respective wildtype reference. Protein identification and quantification was performed by data-independent MSE acquisition on ...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2016-12-14 | PXD004125 | Pride

Cattle influenza D virus in Brazil is divergent from established lineages.

Not available

S-EPMC8929453 | biostudies-literature

A Randomized, Double-Blind, Parallel Study to Evaluate the Dose-Response of Three Different Vitamin D Treatment Schemes on the 25-Hydroxyvitamin D Serum Concentration in Patients with Vitamin D Deficiency.

Not available

S-EPMC4517004 | biostudies-literature

Endophytic <i>Diaporthe</i> species from Brazil.

Not available

S-EPMC11736253 | biostudies-literature

Metabolomes of Aquimarina (Flavobacteriaceae, Bacteroidetes) Species, Positive Ionization Polarity

Paper title: Insights into the antimicrobial activities and metabolomes of Aquimarina (Flavobacteriaceae, Bacteroidetes) species from the rare marine biosphere Author List: Silva, SG, Paula, P, da Silva, J.P, Mil-Homens, D, Teixeira, MC, Fialho, A, Costa, R, Keller-Costa, T PubMedID: Brief descripti...

ORGANISM(S): Aquimarina (ncbitaxon:290174)

2022-05-26 | MSV000089550 | MassIVE

Pyrimido[5,4-d]pyrimidine-Based Compounds as a Novel Class of Antitrypanosomal and Antileishmanial Agents.

Not available

S-EPMC9465711 | biostudies-literature

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