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TranscriptomicsTranscription profiling of primary hippocampal neurons isolated from mouse E17 embryos and undergoing differentiation in the culture for 7h, 18h, 33h, 72h, 8 days, 12 days (at which time points the RNA was extracted) vs RNA isolated from a newborn brain
A time-course experiment, in which the gene expression in the primary hippocampal neurons isolated from E17 embryos and undergoing differentiation in the culture for 7h, 18h, 33h, 72h, 8 days, 12 days (at which time points the RNA was extracted) was compared by competitive hybridization with a commo...
ORGANISM(S): Mus musculus 
2003-06-01 | E-MEXP-11 | biostudies-arrayexpress
GenomicsNCoR1, SMRT, Polymerase II and input ChIP-Seq
ChIP-seq of mouse embryonic fibroblast-adipose like cell line 3T3-L1 to identify binding sites of NCoR1 and SMRT following induction of differentiation, and RNA Pol-II after SMRT knock down
ORGANISM(S): Mus musculus 
2012-04-23 | E-MTAB-1031 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of homozygous Commd1 null mouse embryos to elucidate the underlying mechanism leading to embryonic lethality
A gene expression study using microarray analysis was performed to elucidate the underlying mechanism leading to embryonic lethality in homozygous Commd1 null (Commd1-/-) mouse embryos. A gene expression profile of 9.5 dpc Commd1-/- embryos were generated and were compared to a gene expression profi...
ORGANISM(S): Mus musculus 
2006-09-01 | E-MEXP-832 | biostudies-arrayexpress
GenomicsDNA sequencing of selected Globobulimina pseudospinescens organisms
We introduce FACIL (http://www.cmbi.ru.nl/FACIL), a fast, reliable tool to evaluate nucleic acid sequences for non-standard codes that detects alternative genetic codes even in species distantly related to known organisms. Results are visualized in a Genetic Code Logo. To illustrate the use of our m...
ORGANISM(S): Globobulimina pseudospinescens 
2011-06-20 | E-GEOD-26664 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of MIII celiac disease patients vs controls (M0) individuals
Comparison of MIII celiac disease patients to controls (M0) individuals.
ORGANISM(S): Homo sapiens 
2005-01-01 | E-MEXP-42 | biostudies-arrayexpress
TranscriptomicsHT-project: Expression profiling after prolonged experimental febrile seizures suggests structural remodeling in the hippocampus
Febrile seizures are the most prevalent type of seizures among children up to 5 years of age (2-4% of Western-European children). Complex febrile seizures are associated with an increased risk to develop temporal lobe epilepsy. To investigate short- and long-term effects of experimental febrile seiz...
ORGANISM(S): Mus musculus 
2016-01-04 | E-GEOD-66762 | biostudies-arrayexpress
TranscriptomicsAVATARS - Tissue-specific multi-omics analyses in developing Brassica napus seeds [sRNA-Seq]
In this project, we developed a data resource based on the German winter oilseed rape cultivar Express 617. Plants were grown under controlled environmental conditions in the container-based system of the IPK PhenoSphere in 2020-2021. The dataset comprises small RNA (including microRNA) data generat...
ORGANISM(S): Brassica napus 
2026-10-28 | E-MTAB-15759 | biostudies-arrayexpress
TranscriptomicsRNA-seq analysis of Tetrahymena thermophila
We present a comprehensive transcriptome of ciliate T. thermophila using the Illumina RNA-seq platform. The data was generated from the six mRNA samples of growth, starvation and conjugation of Tetrahymena. Despite an AT rich genome, there are about 124.6 million reads mapped to T. thermophila genom...
ORGANISM(S): Tetrahymena thermophila 
2012-03-15 | E-GEOD-27971 | biostudies-arrayexpress
TranscriptomicsExercise-induced mitochondrial translocation of p53 repairs mitochondrial DNA mutations
Exercise is a fundamental component of human health that is associated with greater life expectancy and reduced risk of chronic diseases. While the beneficial effects of endurance exercise on human health are well established, the molecular mechanisms responsible for these observations remain unclea...
ORGANISM(S): Mus musculus 
2015-12-11 | E-GEOD-75869 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of heptatocytes from mice given a high-copper diet
In order to study the physiological consequences of a high-copper diet on hepatic gene expression, 6 mM CuCl2 was added to the drinking water for a period of 1 month. After this period, livers of seven control mice and eight copper-treated mice were isolated and were subjected to microarray analysis...
ORGANISM(S): Mus musculus 
2007-06-01 | E-MEXP-745 | biostudies-arrayexpress
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