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ProteomicstimsTOF DDA Dataset for Article “False discovery rate control enables trustworthy AI-based de novo peptide sequencing”
This project contains an in-house timsTOF DDA proteomics dataset used in the study "False discovery rate control enables trustworthy AI-based de novo peptide sequencing". The dataset includes 100 HEK293T samples and 100 mouse tissue samples acquired for routine quality control on a timsTOF mass spec...
ORGANISM(S): Homo Sapiens Mus Musculus 
2026-07-06 | PXD080632 |
ProteomicsTrace sample analysis using Data-Dependent Acquisition Without Dynamic Exclusion
In this study, we report the application of turboDDA in improving trace sample analysis. Using different amount of K562 samples, we detected increases in identified protein number of more than 20% compared to all samples analyzed by standard DDA with dynamic exclusion.
ORGANISM(S): Homo sapiens (Human) 
2024-01-26 | PXD042385 | Pride
Turbodda K562 High ph fractionation De-dda 
UnknownA streamlined platform for analyzing tera-scale DDA and DIA mass spectrometry data enables highly sensitive immunopeptidomics.
Not available
S-EPMC9174175 | biostudies-literature
UnknownDe novo biosynthesis of nylon 12 monomer ω-aminododecanoic acid.
Not available
S-EPMC11695860 | biostudies-literature
UnknownTechnical advances in proteomics: new developments in data-independent acquisition.
Not available
S-EPMC4821292 | biostudies-literature
ProteomicsScreening of protein carbonylation sites in human serum by ion mobility mass spectrometry
Excessive oxidative stress, which is associated with several diseases, can trigger oxidative protein modifications, including protein carbonylation, which refers to the oxidative formation of aldehyde or keto groups in proteins. The structural diversity of these non-enzymatic reactive carbonyl group...
ORGANISM(S): Homo Sapiens 
PXD058666 | panorama
UnknownWater Uptake as a Crucial Factor on the Properties of Cryogels of Gelatine Cross-Linked by Dextran Dialdehyde.
Not available
S-EPMC8544549 | biostudies-literature
ProteomicsDietary protein in vitro digest (LC-MS)
16 dietary protein preparations were digested according to a standardized invitro digestion (InfoGest) protocol, simulating gastrointestinal digestion. Resulting oligopeptide mixtures were subsequently analyzed by UPLC-MS using DDA shot-gun detection. Peak intensity data from MS1 spectra were obtain...
ORGANISM(S): Bos taurus (Bovine) Pisum sativum (Garden pea) Solanum tuberosum (Potato) Zea mays (Maize) Triticum aestivum (Wheat) Saccharomyces cerevisiae (Baker's yeast) Gallus gallus (Chicken) 
2021-09-09 | PXD021577 | Pride
Dietary protein  in vitro digest  lc-ms  de novo 
ProteomicsLachesis muta snake venom peptidome
Snake venoms are known to be major sources of peptides with different pharmacological properties. In this study, we comprehensively explored the venom peptidomes of three specimens of Lachesis muta, the largest venomous snake in South America, using mass spectrometry techniques. The analysis reveale...
ORGANISM(S): Lachesis muta 
2023-10-23 | PXD045732 | Pride
Peptidomics Bradykinin potentiating peptides Mass spectrometry Lachesis muta Snake venom Snake venom metalloproteinases 
UnknownA de novo MS1 feature detector for the Bruker timsTOF Pro.
Not available
S-EPMC9710787 | biostudies-literature
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