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Unknown (1238)
Transcriptomics (74)
Proteomics (34)
Genomics (11)
Metabolomics (7)
Genomic (1)

Organisms

Mus musculus (41)
Homo sapiens (35)
Arabidopsis thaliana (13)
Anopheles gambiae (2)
Bacteria (2)
Burkholderia cenocepacia (2)
Pinus taeda (1)
Aspergillus flavus (1)
Pinus sylvestris (1)
Macaca mulatta (1)
Zea mays (1)
Oncorhynchus mykiss (1)
Triticum aestivum (1)
Sus scrofa (1)
Plasmodium (1)
Mycobacterium tuberculosis (1)
219334 (1)
Aedes aegypti (1)
Amphibalanus amphitrite (1)
Ananas comosus (1)
Drosophila melanogaster (1)
Lactobacillus acidophilus NCFM (1)
Limosilactobacillus reuteri subsp. reuteri (1)
Mycobacterium marinum M (1)
Myodes glareolus (1)
Saccharomyces cerevisiae (1)
Schizosaccharomyces pombe (1)
Schizosaccharomyces pombe 927 (1)
Trypanosoma brucei (1)

Organisms

Orbicella faveolata (1)

Repository

biostudies-arrayexpress (83)
pride (31)
MetaboLights (7)
dbGaP (1)
EGA (1)
jPOST (1)
MassIVE (1)
PanoramaPublic (1)
ENA (1)

Tissue

Cell culture (9)
Seedling (5)
Hepatocyte (2)
Leaf (2)
Liver (2)
Accessory sex gland (1)
Culture fluid (1)
Ejaculatory duct (1)
Epithelial cell (1)
Esophagus (1)
Esophagus mucosa (1)
Fibroblast (1)
Heart (1)
Internal female genital organ (1)
Intervertebral disc (1)
Kidney (1)
Lung (1)
Lung elastic tissue (1)
Macrophage (1)
Male reproductive gland (1)
Monocyte (1)
Nucleus pulposus cell of intervertebral disc (1)
Ovary (1)
Permanent cell line cell (1)
Plant cell (1)
Skeletal muscle (1)
Testis (1)

Disease

Cystic fibrosis (2)
Down syndrome, acute megakaryoblastic leukaemia (1)
Normal (1)
Acute leukemia (1)
Colorectal cancer (1)
Esophageal cancer (1)
Esophagus adenocarcinoma (1)
Melanoma (1)
Mucopolysaccharidosis Ih/s (1)
Ovary adenocarcinoma (1)
Scoliosis (1)
Skin melanoma (1)

Technology Type

Mass Spectrometry (31)
Shotgun proteomics (15)
Bottom-up proteomics (10)
Data-dependent acquisition (7)
Mass spectrometry (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Data-independent acquisition (2)
Mass spectrometry assay (1)
Gel-based experiment (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (5)
Exactive (Thermo Scientific) (5)
NA (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
LTQ Orbitrap (1)
Flow Injection Analysis MS - Alternating (FIA-MS (Alternating)) (1)
Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - negative - reverse phase - Exactive (Thermo Scientific) (1)
Liquid Chromatography MS - positive - HILIC - Exactive (Thermo Scientific) (1)

Publication Date

2010 (18)
2025 (13)
2015 (9)
2022 (8)
2014 (8)
2013 (8)
2008 (8)
2012 (7)
2011 (7)
2019 (5)
2016 (4)
2007 (4)
2024 (4)
2017 (4)
2023 (3)
2018 (3)
2020 (2)
2009 (2)
2021 (2)
2026 (2)
2005 (1)
2004 (1)
2003 (1)

CHEBI ID

CHEBI:18095 (3)
CHEBI:15584 (2)
CHEBI:15603 (2)
CHEBI:15727 (2)
CHEBI:15729 (2)
CHEBI:15891 (2)
CHEBI:15966 (2)
CHEBI:15971 (2)
CHEBI:16015 (2)
CHEBI:16176 (2)
CHEBI:16283 (2)
CHEBI:16349 (2)
CHEBI:16467 (2)
CHEBI:1670 (2)
CHEBI:16737 (2)
CHEBI:16831 (2)
CHEBI:17061 (2)
CHEBI:17126 (2)
CHEBI:17148 (2)
CHEBI:17191 (2)
CHEBI:17368 (2)
CHEBI:17405 (2)
CHEBI:18050 (2)
CHEBI:18089 (2)
CHEBI:18295 (2)
CHEBI:28790 (2)
CHEBI:28865 (2)
CHEBI:30769 (2)
CHEBI:30887 (2)
CHEBI:30913 (2)

Metabolite Name

4-Pyridoxic acid (2)
Citric acid (2)
D-Glutamine (2)
Hippuric acid (2)
L-Cystine (2)
L-Glutamine (2)
L-Histidine (2)
Taurocholic acid (2)
()-(E)-13-Hydroxy-10-oxo-11-octadecenoic acid (1)
()-1516-Dihydroxyoctadecanoic acid (1)
()-Quebrachidine (1)
(-)-11-Hydroxy-91516-trioxooctadecanoic acid (1)
(-)-Ethyl 3-acetoxy-2-methylbutyrate (1)
(-)-Farnesiferol C (1)
(-)-Matairesinol (1)
(-)-Methyl 5-acetoxyhexanoate (1)
(-)-erythro-Anethole glycol 1-glucoside (1)
(-)-erythro-Anethole glycol 2-glucoside (1)
(10betaH11xi)-11-Hydroxy-13-nor-6-eremophilen-8-one (1)
(1R)-Nepetalic acid (1)
(1R2R)-Isocitric acid (1)
(1R3R4R5S6S8x)-1-Acetoxy-8-angeloyloxy-34-epoxy-5-hydroxy-7(14)10-bisaboladien-2-one (1)
(1R3S4S6R)-69-Dihydroxyfenchone 6-O-b-D-glucoside (1)
(1R4R5S)-5-Hydroxyfenchone glucoside (1)
(1R4S6R)-6-Hydroxyfenchone glucoside (1)
(1S3R4R)-810-Dihydroxyfenchone 10-O-b-D-glucoside (1)
(1S4R)-10-Hydroxyfenchone glucoside (1)
(2E4Z8E)-Colneleic acid (1)
(2R)-1-O-beta-D-Galactopyranosylglycerol (1)
(3a5b)-24-oxo-24-(2-sulfoethyl)aminocholan-3-yl-b-D-Glucopyranosiduronic acid (1)

First Public Date

2014 (1)

Study type

Transcription profiling by array (49)
Unknown experiment type (7)
RNA-seq of coding RNA (5)
ChIP-seq (4)
Methylation profiling by high throughput sequencing (4)
Transcription profiling by SAGE (3)
RNA-seq of coding RNA from single cells (3)
ChIP-chip by tiling array (2)
Comparative genomic hybridization by array (2)
Cell line - High-throughput sequencing (1)
ChIP-chip by array (1)
DNA-seq (1)
RNA-seq of total RNA (1)

Release Date

2021 (152)
2022 (134)
2024 (131)
2023 (123)
2025 (115)
2020 (109)
2019 (94)
2018 (76)
2017 (67)
2015 (52)
2016 (47)
2014 (43)
2013 (33)
2010 (28)
2011 (19)
2026 (18)
2012 (16)
2008 (16)
2009 (14)
2007 (10)
2005 (6)
2006 (5)
2003 (4)
2004 (3)
2000 (3)
2001 (2)
2002 (1)

Lab affiliation

The Institute of Cancer Research (2)
Associate Professor, Head of Biochemistry, School of Biomolecular and Biomedical Science, Associate Dean for Widening Participation, College of Science Conway Institute room F059 University College Dublin +353 1 716 6723 (1)
Calico Life Sciences (1)
Center for Bio/Molecular Science & Engineering (Code 6900), US Naval Research Laboratory, Washington DC, USA (1)
Center of Allergy and Environment (ZAUM), Technical University of Munich and Helmholtz Center Munich, 80802 Munich, Germany Department of Immunobiology, Université de Lausanne, 1066 Epalinges, Switzerland (1)
David O. Morgan PhD Professor, Department of Physiology Vice Dean for Research, School of Medicine University of California, San Francisco Genentech Hall Room N312B 600 16th Street San Francisco CA 94143 415-476-6695 (1)
Department of Pathology and Immunology, Baylor College of Medicine, Houston, TX 77030 (1)
Dept. of Cellular & Molecular Physiology Institute of Translational Medicine University of Liverpool Crown Street Liverpool L69 3BX (1)
Discovery Proteomics Facility Oxford (1)
Edward Grey Institute, Department of Zoology, University of Oxford, Oxford, UK (1)
Group Leader Cell & Developmental Biology John Innes Centre (1)
Group Leader Department Cell and Developmental Biology John Innes Centre Norwich, UK (1)
Group leader Cell and Developmental Biology John Innes Centre Norwich Research Park Norwich, UK (1)
Group leader Department Biochemistry and Metabolism John Innes Centre JIC Norwich Reseach Park Norwich, UK (1)
Institute for Systems Biology, Seattle, WA, USA (1)
Institute of Translational Medicine University of Liverpool Crown Street Liverpool L69 3BX (1)
Interim Dean Life Sciences Office, School of Life Sciences, University of Dundee (1)
John Innes Centre Norwich Research Park Norwich NR4 7UH, UK (1)
Louise B. McGavock Professor Department of Cell and Developmental Biology Senior Associate Dean for Biomedical Research, Education and Training Vanderbilt University School of Medicine (1)
Louise B. McGavock Professor Department of Cell and Developmental Biology Senior Associate Dean for Biomedical Research, Education and Career Development. Vanderbilt University School of Medicine (1)
Naval Research Laboratory (1)
Professor, School of Life Sciences, The Chinese University of Hong Kong Director, Centre for Protein Science and Crystallography Assistant Dean (Student Affairs), Faculty of Sciences Fellow, Shaw College (1)
Research Professor Cell and Developmental Biology John Innes Centre Norwich Research Park Norwich, UK (1)
S Y and H Y Cheng Professor in Stem Cell Biology and Regenerative Medicine Assistant Dean (Research postgraduate studies), Faculty of Medicine Professor (School of Biomedical Sciences), Faculty of Medicine Deputy Director (Education and Development of Research Integrity), HKU (1)
Siobhán McClean, PhD, PDip Associate Professor, Head of Biochemistry, School of Biomolecular and Biomedical Science, Associate Dean for Widening Participation, College of Science Conway Institute room F059 University College Dublin +353 1 716 6723 (1)
State Key Laboratory of Natural and Biomimetic Drugs, Department of Molecular and Cellular Pharmacology, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China. (1)
Target Discovery Institute, Nuffield Dept Medicine, University of Oxford, UK (1)
University of Arizona Professor Emerita, Department of Nutritional Science Associate Dean, Bart Cardon Career and Academic Services (1)
University of Liverpool (1)
Vice-Dean and Head of School, School of Biological Sciences, Faculty of Biology, Medicine and Health, The University of Manchester (1)

Tags

xref:PubMed:20149089 (1)

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Biomarker genes highlight intraspecific and interspecific variations in the responses of Pinus taeda L. and Pinus radiata D. Don to Sirex noctilio F. acid gland secretions

Sirex noctilio F., a Eurasian horntail woodwasp recently introduced into North America, oviposits in pines and other conifers and in the process spreads a phytopathogenic fungus that serves as a food source for its larvae. During oviposition the woodwasp also deposits a mucus produced in its acid (...

ORGANISM(S): Pinus taeda

2012-08-09 | E-GEOD-40000 | biostudies-arrayexpress

AtSeedlingRootMunitionResponses

Roots transcriptome responses 14-day old Arabidopsis seedlings grown submerged in MS medium and exposed to TNT or RDX. Keywords = phytoremediation Keywords = explosives Keywords = TNT Keywords = RDX Keywords: parallel sample Complete experiment contains only three samples, including the control.

ORGANISM(S): Arabidopsis thaliana

2003-07-30 | E-GEOD-560 | biostudies-arrayexpress

Changes in Muscarinic M2 Receptor Levels in the Cortex of Subjects with Bipolar Disorder and Major Depressive Disorder and in Rats after Treatment with Mood Stabilisers and Antidepressants.

Not available

S-EPMC4851264 | biostudies-literature

VAL1 acts as an assembly platform co-ordinating co-transcriptional repression and chromatin 2 regulation at Arabidopsis FLC

• Polycomb (PcG) regulation is crucial for development across eukaryotes, but how PcG targets are specified is still incompletely understood. The slow timescale of cold-induced Polycomb Repressive Complex 2 silencing during vernalization at Arabidopsis thaliana FLOWERING LOCUS C (FLC) provides an ex...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2022-10-13 | PXD036548 | Pride

MaHPIC Experiment HuC - Metabolomics of plasma samples from human volunteers infected with Plasmodium vivax

Project Description:
The Malaria Host-Pathogen Interaction Center (MaHPIC) is a transdisciplinary malaria systems biology research program initially supported by an NIH/NIAID contract (HHSN272201200031C, 2012-2017; see http://w...

2018-06-19 | MTBLS665 | MetaboLights

MaHPIC Experiment HuB - Metabolomics analysis of human plasma from patients infected with Plasmodium falciparum and P.vivax for discovery of diagnostic markers of malaria

MaHPIC Experimental Description:
This study is based on archived plasma from samples collected between 2011 and 2014. Patients in Thailand who were infected with Plasmodium falciparum (30 subjects), P. vivax (30 subjects), co-infected with P. falciparum and P. viv...

2018-09-05 | MTBLS664 | MetaboLights

S-ketamine alleviates depression-like behavior and hippocampal neuroplasticity in the offspring of mice that experience prenatal stress.

Not available

S-EPMC11542010 | biostudies-literature

Multiepitope Dendrimeric Antigen-Silica Particle Composites as Nano-Based Platforms for Specific Recognition of IgEs.

Not available

S-EPMC8678411 | biostudies-literature

Expression changes in MEL cells upon differentiation and Ldb1 knockdown

Carbonic anhydrase 1 (Car1), an early specific marker of the erythroid differentiation, has been used to distinguish fetal and adult erythroid cells since its production closely follows the γ- to β-globin transition, but the molecular mechanism underlying transcriptional regulation of Car1 is unclea...

ORGANISM(S): Mus musculus

2012-12-11 | E-GEOD-42839 | biostudies-arrayexpress

Methicillin resistance of Staphylococcus species among health care and nonhealth care workers undergoing cataract surgery.

Not available

S-EPMC3009999 | biostudies-literature

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