Polycomb - OmicsDI

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Mus musculus (1037)
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2013 (282)
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UNIPROT ID/AC

P16104 (1)
Q93009 (1)
Q06587 (1)
P35226 (1)

CHEBI ID

CHEBI:17191 (2)
CHEBI:16199 (2)
CHEBI:15347 (2)
CHEBI:17634 (2)
CHEBI:17295 (2)
CHEBI:15603 (2)
CHEBI:15971 (2)
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CHEBI:18400 (1)
CHEBI:17166 (1)
CHEBI:30775 (1)
CHEBI:26145 (1)
CHEBI:14272 (1)
CHEBI:90171 (1)
CHEBI:77311 (1)

Metabolite Name

Betaine (2)
D-Erythrose 4-phosphate (2)
Citrate (2)
Acetoacetate (2)
L-Proline (2)
L-Alanine (2)
2'-Deoxyadenosine 5'-triphosphate (dATP) (1)
2'-Deoxycytidine diphosphate (dCDP) (1)
2-trans-Dodecenoyl-CoA (1)
P1,P3-Bis(5'-adenosyl) triphosphate (1)
ADP-mannose (1)
4,5-Dihydro-4-hydroxy-5-S-glutathionyl-benzo[a]pyrene (1)
CDP-1L-myo-inositol (1)
L-Threonylcarbamoyladenylate (1)
3,4-Dihydro-3-hydroxy-4-S-glutathionyl bromobenzene (1)
(25R)-26-Hydroxycholest-4-en-3-one (1)
(25S)-26-Hydroxycholest-4-en-3-one (1)
Cellobiono-1,5-lactone (1)
3-O-alpha-D-Glucopyranosyl-L-rhamnopyranose (1)
2-(2-Carboxy-4-methylthiazol-5-yl)ethyl phosphate (1)
2-O-(alpha-D-Glucopyranosyl)-D-glycerate (1)
N-Acetyl-beta-D-glucosaminylamine (1)
L-Alanyl-D-glutamate (1)
L-Alanyl-L-glutamate (1)
L-Erythrulose 4-phosphate (1)
D-Erythrulose 1-phosphate (1)
4-Maleylacetoacetate (1)
4-Nitro-6-oxohepta-2,4-dienedioate (1)
3-Hydroxy-5-phosphonooxypentane-2,4-dione (1)
N3-Fumaroyl-(S)-2,3-diaminopropanoate (1)

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2014 (314)
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2015 (92)
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Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Laboratoire de Spectrometrie de Masse Proteomique Institut Curie PSL Research University (4)
Centre for Genomic Regulation (CRG), Barcelona, Spain (3)
Center for Genomic Regulation Differentiation and Cancer Passeig Maritim 37-49 Barcelona 08003 SPAIN (2)
Cancer Biology and Genetics, Wexner Medical Center, The Ohio State University, Columbus, OH, USA (2)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences (RIMLS), Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands Division of Molecular Genetics, The Netherlands Cancer Institute, 1066CX, Amsterdam, The Netherlands (2)
ProGenTomics, Laboratory of Pharmaceutical Biotechnology, Ghent University, B-9000 Ghent, Belgium (2)
Head Proteomics Group Leiden University Medical Center Center for Proteomics and Metabolomics (1)
Smurfit Institute of Genetics, Trinity College Dublin, Dublin 2, Ireland (1)
Laboratory of Cellular and Structural Biology (1)
Laboratory of Genetics, University of Wisconsin-Madison, Madison, WI, USA Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI, USA (1)
Group Leader Department Cell and Developmental Biology John Innes Centre Norwich, UK (1)
Division of Pediatric Neurooncology, German Cancer Consortium (DKTK), German Cancer Research Center (DKFZ), 69120 Heidelberg, Germany & Hopp Children’s Cancer Center at the NCT Heidelberg (KiTZ), 69120 Heidelberg, Germany (1)
Department of Pathology, University of Michigan (1)
Group leader Cell and Developmental Biology John Innes Centre Norwich Research Park Norwich, UK (1)
Quantitative Proteomics and Metabolomics Berlin Institute for Medical Systems Biology (BIMSB) Max-Delbrück-Centrum für Molekulare Medizin in der Helmholtz-Gemeinschaft Hannoversche Straße 28 10115 Berlin (1)
IFOM ETS- The AIRC Institute of Molecular Oncology (1)
Department of Molecular Developmental Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Radboud University, Nijmegen, the Netherlands (1)
Monash Proteomics and Metabolomics Facility and the Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia. (1)
Group Leader School of Biomolecular and Biomedical Science Conway Institute, University College Dublin, Belfield, Dublin 4, IRELAND (1)
Laboratory of Genome Biology, Institute of Molecular Biology and Biotechnology, Adam 8 Mickiewicz University, 61-614 Poznan, Poland (1)
Professor, Dept. of Biochemistry & Molecular Biology Robson DNA Science Centre, Arnie Charbonneau Cancer Institute Cumming School of Medicine, University of Calgary, Calgary, Alberta http://structurems.ucalgary.ca (1)
Paul J Lehner PhD FRCP FMed Sci FRS Sheila Joan Smith Professor of Immunology Wellcome Principal Fellow and Honorary Consultant University of Cambridge CITIID Cambridge Biomedical Campus Cambridge CB2 0AW (1)
Proteomics Center // Erasmus MC (1)
Radboud University/Radboud UMC, Faculty of Science, Department of Molecular Biology, Radboud Institute for Molecular Life Sciences, Nijmegen, the Netherlands (1)
Epigenetic Events in Cancer (L. Di Croce's lab) Gene Regulation, Stem Cells and Cancer Centre for Genomic Regulation (CRG) C/ Dr. Aiguader, 88 08003 Barcelona Spain (1)
Radboud University, Department of Molecular Developmental Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, 6500 HB Nijmegen, The Netherlands (1)
Department of Cell and Developmental Biology, Perelman School of Medicine, University of Pennsylvania (1)
Institut Curie, Paris Sciences et Lettres Research University, INSERM U934/ CNRS, UMR3215 (1)
MRC-LMS: Head of Proteomics and Metabolomics Core Facility (1)
Biotech Research and Innovation Centre, University of Copenhagen, Ole Maaløes Vej 5, Copenhagen 2200, Denmark (1)

IsPrivate

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Classification

fungi (3)

Modification

N6 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (412)
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Dynamic protein interactions of the Polycomb Repressive Complex 2

Polycomb proteins assemble to form complexes with important roles in epigenetic regulation. The Polycomb Repressive Complex 2 (PRC2) modulates the di- and tri-methylation of lysine 27 on histone H3, each of which are associated with gene repression. Although three subunits, EZH1/2, SUZ12 and EED, fo...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2017-03-29 | MSV000080739 | MassIVE

Genome-wide Identification of Polycomb Target Genes Reveals a Functional Association of Pho with Scm in Bombyx mori

Polycomb group (PcG) proteins are involved in chromatin modifications for maintaining gene repression that play important roles in the regulation of gene expression, tumorigenesis, chromosome X-inactivation, and genomic imprinting in Drosophila melanogaster, mammals, and even plants. PcG proteins ac...

ORGANISM(S): Bombyx mori

2012-04-17 | E-GEOD-34246 | biostudies-arrayexpress

Frequent switching of Polycomb repressive marks and DNA hypermethylation in the PC3 prostate cancer cell line

Epigenetic reprogramming is commonly observed in cancer, and is hypothesized to involve multiple mechanisms, including DNA methylation and Polycomb repressive complexes (PRCs). Here we devise a new experimental and analytical strategy using customized high density tiling arrays to investigate coordi...

ORGANISM(S): Homo sapiens

2008-08-07 | E-GEOD-12334 | biostudies-arrayexpress

The Polycomb protein Pcgf2/Mel18 regulates mesoderm cell fate-specification of embryonic stem cells through multiple mechanisms

Polycomb complexes are essential regulators of stem cell identity, yet very little is known about their molecular mechanisms during cell differentiation. Pcgf proteins (Pcgf1/2/3/4/5/6) are core subunits of the Polycomb repressive complex 1 (PRC1). It has been recently proposed that specific Pcgf pr...

ORGANISM(S): Mus musculus

2015-09-04 | E-GEOD-67868 | biostudies-arrayexpress

dKDM2 couples histone H2A ubiquitylation to histone H3 demethylation during Polycomb group silencing.

Transcription regulation involves enzyme-mediated changes in chromatin structure. Here, we describe a novel mode of histone crosstalk during gene silencing, in which histone H2A monoubiquitylation is coupled to the removal of histone H3 Lys 36 dimethylation (H3K36me2). This pathway was uncovered thr...

ORGANISM(S): Drosophila melanogaster

2011-12-13 | E-GEOD-34390 | biostudies-arrayexpress

Direct Recruitment of Polycomb Repressive Complex 1 (PRC1) to Chromatin by Core Binding Transcription Factors (ChIP-Seq)

Polycomb repressive complexes (PRCs) play key roles in developmental epigenetic regulation. Yet the mechanisms that target PRCs to specific loci in mammalian cells remain incompletely understood. In this study, we show that Bmi1, a core component of Polycomb Repressive Complex 1 (PRC1), binds direct...

ORGANISM(S): Mus musculus

2012-02-10 | E-GEOD-33653 | biostudies-arrayexpress

ChIP-chip by tiling array of Drosophila Polycomb group protein Sce/Ring in larvae

Analysis of binding profile of the Polycomb group protein Sce/Ring in Drosophila melanogaster larvae.

ORGANISM(S): Drosophila melanogaster

2011-04-03 | E-TABM-988 | biostudies-arrayexpress

Polycomb Group Protein Pcgf6 Acts as a Master Regulator to Maintain Embryonic Stem Cell Identity

We report that the PRC1 component polycomb group ring finger 6 (Pcgf6) is required to maintain embryonic stem cell (ESC) identity. In contrast to canonical PRC1, Pcgf6 acts as a positive regulator of transcription and binds predominantly to promoters bearing active chromatin marks.Â Pcgf6Â is expres...

ORGANISM(S): Mus musculus

2016-07-28 | E-GEOD-84905 | biostudies-arrayexpress

The Polycomb Group Protein Suz12 Is Required for Embryonic Stem Cell Differentiation

Polycomb group (PcG) proteins form multiprotein complexes, called Polycomb repressive complexes (PRCs). PRC2 contains the PcG proteins EZH2, SUZ12, and EED and represses transcription through methylation of lysine (K) 27 of histone H3 (H3). Suz12 is essential for PRC2 activity and its inactivation r...

ORGANISM(S): Mus musculus

2011-08-11 | E-GEOD-31354 | biostudies-arrayexpress

Drosophila variant Polycomb complex subunits LC-MS

Our proteomics anaylsis in Drosophila embryos revealed alternative forms of PRC2 and several distinct variant PRC1 types which are similar to polycomb complexes in mammals

ORGANISM(S): Drosophila melanogaster (Fruit fly)

2022-10-15 | PXD033615 | Pride

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