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TranscriptomicsExpression profile for BW25113 M-NM-^TmqsRA with deoxycholate stress
MqsR/MqsA is a well-characterized toxin/antitoxin system with several regulatory roles. Deletion of mqsRA reduced growth with deoxycholate stress. Here we performed a microarray to determine the expression profile with and without mqsRA under deoxycholate stress to determine transcriptional regulat...
ORGANISM(S): Escherichia coli BW25113 
2015-01-09 | E-GEOD-59441 | biostudies-arrayexpress
TranscriptomicsThe transcriptional profile of deoxycholate-induced sporulation in Clostridium perfringens food poisoning isolate
Clostridium perfringens type A is a common source of food poisoning in humans. Vegetative cells sporulate in the small intestinal tract and produce a major pathogenic factor, C. perfringens enterotoxin (CPE) during sporulation. Although sporulation plays a critical role in the pathogenesis of food p...
ORGANISM(S): Clostridium perfringens 
2016-03-13 | E-GEOD-69649 | biostudies-arrayexpress
ProteomicsEvaluation of sodium deoxycholate as solubilization buffer
Sodium deoxycholate was evaluated as alternative protein solubilization buffer to a more commonly used urea/thiourea buffer. Sodium deoxycholate was found to have similar efficiency as of urea/thiourea buffer in solubilizing proteins from oil palm fruit mesocarps.
ORGANISM(S): Elaeis guineensis var. tenera (Oil palm) 
2019-08-16 | PXD013255 | Pride
Sodium deoxycholate Oil palm Proteomics 
ProteomicsGlobal functional impacts of Campylobacter jejuni stress induced by exposure to deoxycholate
Comparison of the Campylobacter jejuni NCTC 11168 proteome in MH media in the presence and absence of Deoxycholate
ORGANISM(S): Campylobacter jejuni 
2017-11-21 | PXD005306 | Pride
Bile Deoxycholate Salt 
TranscriptomicsCulture of Campylobacter jejuni with Sodium Deoxycholate induces Virulence Gene Expression
C. jejuni, a spiral-shaped gram-negative bacterium, is a leading bacterial cause of human foodborne illness. Acute disease is associated with C. jejuni invasion of the intestinal epithelium. Further, maximal host cell invasion requires the secretion of proteins termed Campylobacter invasion antige...
ORGANISM(S): Campylobacter jejuni 
2010-05-26 | E-GEOD-10110 | biostudies-arrayexpress
ProteomicsPeptide recovery from acid-precipitated sodium deoxycholate pellet
Sodium deoxycholate (SDC) is MS-compatible ionic detergent which is compatible with in-solution tryptic digestion. SDC is removed from tryptic digested mixtures easily by acid precipitation and it has been demonstrated its capacity to increase trypsin activity. Additionally, and on the contrary to u...
ORGANISM(S): Homo sapiens (Human) 
2016-02-04 | PXD002811 | Pride
Human plasma / mass spectrometry / shotgun proteomics / sodium deoxycholate / trypsin digestion. 
GenomicsDeoxycholate induces biofilm formation by Clostridium difficile while repressing sporuation and toxin production
Deoxycholate induces biofilm formation by Clostridium difficile while repressing sporuation and toxin production
PRJNA407768 | ENA
TranscriptomicsExpression profile for BW25113 ΔmqsRA with deoxycholate stress
MqsR/MqsA is a well-characterized toxin/antitoxin system with several regulatory roles. Deletion of mqsRA reduced growth with deoxycholate stress. Here we performed a microarray to determine the expression profile with and without mqsRA under deoxycholate stress to determine transcriptional regulati...
ORGANISM(S): Escherichia coli BW25113 Escherichia coli 
2015-01-09 | GSE59441 | GEO
TranscriptomicsDeoxycholate induces biofilm formation by Clostridium difficile while repressing sporuation and toxin production
The objective of our study was to characterize the response of C. difficle to deoxycholate. When C. difficile was grown in the presence of deoxycholate, we observed an increase in biofilm formation. We then analyzed the transcriptome of the DCA-induced biofilm and cells grown in the absence of deoxy...
ORGANISM(S): Clostridioides difficile 
2019-04-05 | GSE103952 | GEO
ProteomicsEnhanced Quantitative LC-MS/MS Analysis of N-linked Glycans Derived from Glycoproteins Using Sodium Deoxycholate Detergent
Protein glycosylation is a common protein post-translational modification (PTM) in living organisms and has been shown to associate with multiple diseases, and thus may potentially be a biomarker of such diseases. Efficient protein/glycoprotein extraction is a key step in the preparation of N-glycan...
ORGANISM(S): Homo sapiens (Human) 
2018-05-16 | PXD008687 | Pride
Acidic labile detergent Detergent removal Lc-ms/ms sample preparation N-glycomics Sodium deoxycholate 
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