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TranscriptomicsExpression data from mouse skeletal muscle
We generated skeletal muscle-specific knockout mice lacking the transcription factor Yin Yang 1 (YY1) and analyzed expression patterns in the skeletal muscle these mice. We used microarrays to detail the global programme of gene expression regulated by YY1. Wild type or knockout mice at 6 months wer...
ORGANISM(S): Mus musculus 
2012-06-29 | E-GEOD-39009 | biostudies-arrayexpress
no omics definedTranscription profiling of Yersinia pestis wild type and phoP deletion strains
Microarrays were used to identify Y. pestis genes that are transcriptional targets of phoP. RNA samples were isolated from cultures of two isogenic Y. pestis strains, one carrying wild-type phoP (KIM6+) and the other carrying a deletion within phoP (KIM6+phoP(delta)), and their gene expression prof...
ORGANISM(S): Yersinia pestis 
2006-07-01 | E-MEXP-713 | biostudies-arrayexpress
TranscriptomicsThe association between gene expression and whole genome histone H3K4 mono-, di, and trimethylation: expression data
These microarrays are part of a study where a comparison was made between the change in transcription and H3K4 mono-, di-, and tri-methylation levels (via ChIP-seq) in the Arabidopsis thaliana genome when plants are subjected to water deficit stress. Water deficit stress causes a large number of gen...
ORGANISM(S): Arabidopsis thaliana 
2010-12-07 | E-GEOD-11538 | biostudies-arrayexpress
no omics definedTranscription profiling of Yersinia pestis overexpressing phoP
Microarrays were used to identify Y. pestis genes that are differentially regulated under conditions of phoP overexpression. RNA samples were isolated from cultures of two isogenic Y. pestis strains, one overexpressing phoP (KIM10+phoP(delta)/PhoP) and the other not (KIM10+phoP(delta)/MMB67EH), and ...
ORGANISM(S): Yersinia pestis 
2006-07-01 | E-MEXP-712 | biostudies-arrayexpress
ProteomicsComprehensive profiling of lysine acetylome in Yersinia pestis
Yersinia pestis is a lethal pathogen responsible for millions of human deaths in three worldwide pandemics.The global acetylome analyses of Y. pestis grown under conditions mimicking two typical niches, i.e., the mammalian host (Mh) and the flea vector (Fv), were performed.
ORGANISM(S): Yersinia Pestis Biovar Microtus Str. 91001 
2023-07-06 | PXD038124 |
GenomicsGenome-wide survey of YY1 targets in C2C12 cells by High-throughput sequencing
By applying ChIP-seq, we generated genome-wide maps of YY1 in skeletal myoblasts and myotubes. We found that YY1 binds to 1820 confident target with a large portion residing in the intergenic regions. In addition, YY1 was found to activate many loci, and there is no significant overlap between YY1 a...
ORGANISM(S): Mus musculus 
2013-08-15 | E-GEOD-45875 | biostudies-arrayexpress
ProteomicsOrganic di-selenide hydrogel microspheres for multimodal treatment of osteoarthritis.
There is a general consensus that supplementation with selenoprotein elements can effectively mitigate osteoarthritis. In this study, we addressed the deficiency of selenoprotein expression in osteoarthritis patients by developing reactive oxygen species/matrix metalloproteinase 13 (ROS/MMP13) dual-...
ORGANISM(S): Mus musculus (Mouse) Rattus norvegicus (Rat) 
2025-12-24 | PXD072313 | Pride
Selenoprotein Mitochondrial function restored Dual-responsive microsphere Cartilage regeneration Txnrd1 
UnknownComparative Lysine Acetylome Analysis of Y. pestis YfiQ/CobB Mutants Reveals that Acetylation of SlyA Lys73 Significantly Promotes Biofilm Formation of Y. pestis.
Not available
S-EPMC10433856 | biostudies-literature
MetabolomicsMetabolite signatures of diverse Camellia sinensis tea populations
Tea plants (Camellia sinensis) present an excellent system to study evolution and diversification of specialized metabolites due to their abundance in classes, numbers and contents. A large number of tea cultivars have been cultivated throughout the world not only because of their adaption to differ...
2020-10-05 | MTBLS1405 | MetaboLights
UnknownCyclic di-AMP impairs potassium uptake mediated by a cyclic di-AMP binding protein in Streptococcus pneumoniae.
Not available
S-EPMC3911161 | biostudies-literature
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