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TranscriptomicsExperimental identification of small non-coding RNAs in the model marine bacterium Ruegeria pomeroyi DSS-3
In oligotrophic ocean waters where bacteria are often subjected to chronic nutrient limitation, community transcriptome sequencing has pointed to the presence of highly abundant small RNAs (sRNAs). The role of sRNAs in regulating response to nutrient stress was investigated in a model heterotrophic ...
ORGANISM(S): Ruegeria pomeroyi DSS-3 
2016-02-27 | E-MTAB-4468 | biostudies-arrayexpress
TranscriptomicsA general framework for optimization of probes for gene expression microarray and its application to the fungus Podospora anserina
A genome wide microarray, covering the 10546 presently known and predicted CDS, has been constructed with the Agilent in-situ synthesized 60-mers technology. 1) A library of 10 oligonucleotides per CDS has been design by the manufacturer. 2) A computational step has been performed to determine 3' po...
ORGANISM(S): Podospora anserina 
2010-06-30 | E-GEOD-20734 | biostudies-arrayexpress
TranscriptomicsThe plasmid-borne Type II Secretion System of Escherichia coli O157:H7 isolate Sakai mediates adherence to spinach. Experiment 1: screening E coli O157:H7 Sakai genes for adherence to spinach roots.
Food-borne illness arising for Shiga-toxigenic Escherichia coli is often linked to consumption of fruit and vegetables as the bacteria have the ability to interact with plants and use them as alternative or secondary hosts. Attachment of the bacteria to host tissue is one of the first steps in the ...
ORGANISM(S): Escherichia coli 
2019-11-20 | E-MTAB-5923 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of year-long 10 degree C reduction in water temperature on global gene expression in tail skeletal muscle from adult, male zebrafish
The effect of a year-long 10 reduction in water temperature on global gene expression in tail skeletal muscle from adult, male zebrafish was determined using a long oligonucleotide probe set (16,399 65mers from Compugen) spotted onto glass slides. Outbred male zebrafish were obtained from a commerci...
ORGANISM(S): Danio rerio 
2005-01-01 | E-TIGR-19 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of three developmental stages of Leishmania major - earlylLog, PNA- metacyclics and mouse lesion derived amastigotes
Comparison of three developmental stages (Early Log, PNA- metacyclics and Mouse lesion Derived Amastigotes) of L.major FV1.
ORGANISM(S): Leishmania major 
2009-10-15 | E-MEXP-1864 | biostudies-arrayexpress
UnknownEfficacy and Safety of Degludec versus Glargine in Type 2 Diabetes.
Not available
S-EPMC5731244 | biostudies-literature
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