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ProteomicsQuantitative proteome profiling of Coxiella burnetii reveals major metabolic and stress differences under axenic and cell culture cultivation – proteome dataset
Coxiella burnetii, a category B select agent, is endemic worldwide, except New Zealand. It causes annually several outbreaks of the zoonotic disease Q fever predominantly in small ruminants. To date, the lipopolysaccharide (LPS), besides a type IV secretion system (T4SS), is the only defined and cha...
ORGANISM(S): Mus musculus (Mouse) Coxiella burnetii Coxiella burnetii RSA 493 
2019-10-24 | PXD013224 | Pride
Lipopolysaccharide Type iv secretion system Q-exactive Dot/icm Stress response Axenic culture Metabolic activity Quantitative proteomics Coxiella burnetii 
ProteomicsP4PP: an universal shotgun proteomics data analysis pipeline for virus identification  
Humans can be infected by a wide variety of virus species. To detect these different viruses, a data analysis approach for shotgun proteomic data was developed. For this proteome for pandemic preparedness (P4PP) pipeline, a database (P4PPv01) and a web application (P4PP) were constructed. The P4PP p...
ORGANISM(S): Homo sapiens (Human) Orthopoxvirus Chlorocebus sabaeus 
2025-05-28 | PXD057159 | Pride
Orthopoxviruses Lc-ms/ms 
ProteomicsThe proteome of Rickettsia akari revealed a 44kDa-OMP as novel biomarker for Rickettsialpox
Our study aimed to investigate the proteome structure of R. akari and unveil immunoreactive surface-exposed proteins using the latest proteomics techniques. To achieve these goals, we applied the Shotgun protein identification approach; membrane surface protein enrichment methods combined with liqui...
ORGANISM(S): Rickettsia akari 
2020-07-13 | PXD017762 | Pride
Egg culture Q-exactive Vero cell line Rickettsia akari 
ProteomicsFrancisella tularensis LVS MSMS spectral library for SRM design
This analysis was performed in order to collect a library of MSMS spectra for tryptic peptides derived from Francisella tularensis LVS proteins. Such MSMS library facilities the design and refinement of LC-SRM assays.
ORGANISM(S): Francisella tularensis subsp. holarctica (strain LVS) 
2019-06-04 | PXD001069 | Pride
Francisella tularensis lvs Msms Spectral library 
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