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Proteomics
(4410)
Metabolomics
(271)
Unknown
(263)
Other
(113)
Transcriptomics
(44)
Genomics
(11)
Multiomics
(8)
Organisms
Homo sapiens
(255)
Mus musculus
(99)
Escherichia coli
(12)
Arabidopsis thaliana
(9)
Rattus norvegicus
(8)
Rattus rattus
(6)
Penicillium oxalicum 114-2
(5)
Saccharomyces cerevisiae
(4)
Drosophila melanogaster
(4)
Bos taurus
(3)
Danio rerio
(3)
Maclura tricuspidata
(3)
Sus scrofa domesticus
(3)
Aeromonas hydrophila subsp. hydrophila ATCC 7966
(3)
Trichoderma reesei QM6a
(2)
Brassica rapa subsp. pekinensis
(1)
Aspergillus nidulans
(1)
Salmonella enterica subsp. enterica serovar Enteritidis
(1)
Tetranychus urticae
(1)
Aspergillus fumigatus
(1)
Zea mays
(1)
Oryza sativa
(1)
Metabacillus indicus
(1)
Microbispora corallina
(1)
Viridiplantae
(1)
Tunicata
(1)
Sternaspis chinensis
(1)
Dendrobium nobile
(1)
Klebsiella pneumoniae ATCC 43816
(1)
Suid alphaherpesvirus 1
(1)
Organisms
Homo sapiens
(2)
Mus musculus
(2)
Repository
pride
(3079)
MassIVE
(867)
jPOST
(311)
MetaboLights
(203)
iProX
(120)
GNPS
(68)
GPMDB
(46)
biostudies-arrayexpress
(45)
PeptideAtlas
(45)
PanoramaPublic
(34)
PAXDB
(17)
ENA
(9)
geo
(4)
LINCS
(1)
Tissue
Cell culture
(678)
Epithelial cell
(186)
Brain
(138)
Permanent cell line cell
(126)
Plant cell
(79)
Blood plasma
(79)
Liver
(75)
Leaf
(74)
Fibroblast
(70)
Blood
(65)
Cell suspension culture
(63)
Lung
(56)
Whole body
(53)
Macrophage
(50)
B cell
(45)
Blood cell
(43)
Hepatocyte
(41)
Kidney
(41)
Heart
(39)
Bone marrow
(38)
Blood serum
(38)
HeLa cell
(35)
T cell
(35)
Colon
(34)
Embryonic stem cell
(32)
Skin
(31)
Others
(23)
Brain
(2)
Lung
(1)
Prefrontal Cortex
(1)
Disease
Disease free
(87)
Breast cancer
(72)
Not Available
(46)
Acute leukemia
(40)
Colon cancer
(38)
Parkinson's disease
(19)
Cervix carcinoma
(18)
Type 2 diabetes mellitus
(17)
Lymphoma
(16)
Brain cancer
(15)
Multiple myeloma
(14)
Acute myeloid leukemia
(14)
Melanoma
(13)
Trypanosomiasis
(13)
Cardiovascular system disease
(11)
Malignant neoplasm of ovary
(11)
Prostate adenocarcinoma
(10)
Neuroblastoma
(10)
Malaria
(10)
Non-small cell lung carcinoma
(9)
Pancreatic ductal adenocarcinoma
(9)
Alzheimer's disease
(9)
Amyotrophic lateral sclerosis
(9)
Wounds and Injuries
(9)
Lung adenocarcinoma
(8)
Pancreatic cancer
(8)
Hepatocellular carcinoma
(7)
Plasmodium falciparum malaria
(7)
Non-small Cell Lung Carcinoma
(1)
Alzheimer's Disease
(1)
Technology Type
Mass Spectrometry
(3079)
Shotgun proteomics
(1670)
Bottom-up proteomics
(542)
Affinity purification coupled with mass spectrometry proteomics
(401)
Gel-based experiment
(309)
Data-dependent acquisition
(307)
Data-independent acquisition
(160)
Mass spectrometry
(116)
Top-down proteomics
(106)
Mass spectrometry assay
(86)
SWATH MS
(86)
Chemical cross-linking coupled with mass spectrometry proteomics
(37)
SRM/MRM
(27)
DiaPASEF
(17)
All-ion fragmentation
(12)
Affinity proteomics
(11)
MSE
(9)
Proteogenomics
(8)
Immunopeptidomics
(7)
Mass spectrometry imaging
(5)
Metaproteomics
(4)
HDMSE
(4)
RNA mass spectrometry
(3)
NMR spectroscopy
(2)
Shotgun-MS
(1)
Mass spectrometry
(1)
Two Dimensional Polyacrylamide Gel Electrophoresis
(1)
PAcIFIC
(1)
Instrument Platform
Q Exactive
(183)
LTQ Orbitrap Velos
(80)
Q Exactive HF
(59)
LTQ Orbitrap
(48)
TripleTOF 5600
(22)
TripleTOF 6600
(16)
Impact II
(13)
MaXis
(12)
Impact
(9)
Orbitrap Exploris 240
(8)
MicrOTOF-Q II
(8)
TimsTOF fleX
(7)
Q-Exactive
(6)
Orbitrap ID-X
(5)
LCQ Fleet
(4)
6545 Q-TOF LC/MS
(4)
SYNAPT G2-Si
(4)
Synapt MS
(4)
Xevo G2-S QTof
(3)
Illumina HiSeq 3000
(2)
LTQ Orbitrap velos pro ETD (Thermo Scientific Instrument model)
(2)
LTQ Velos ion-trap mass spectrometer (ThermoFisher)
(2)
Xevo G2 XS Tof
(2)
Illumina HiSeq 2500
(1)
Illumina HiSeq 2000
(1)
NextSeq 500
(1)
6545 Quadrupole Time-of-flight LC/MS (Agilent instrument model)
(1)
6545 Quadrupole Time-of-Flight LC/MS (Agilent Model)
(1)
Q Exactive Focus Orbitrap
(1)
Q-exactive
(1)
Publication Date
2025
(587)
2022
(553)
2023
(539)
2024
(522)
2021
(441)
2020
(398)
2026
(378)
2019
(309)
2018
(279)
2017
(191)
2016
(156)
2014
(111)
2015
(102)
2013
(45)
2012
(12)
2009
(8)
2010
(7)
2011
(2)
2008
(2)
2006
(2)
2005
(2)
2003
(1)
UNIPROT ID/AC
H2B1D_HUMAN
(4)
UBB_HUMAN
(4)
ALBU_HUMAN
(4)
K2C4_HUMAN
(4)
KAP0_HUMAN
(4)
GALT2_HUMAN
(4)
EF1G_HUMAN
(4)
PGAM1_HUMAN
(4)
PSA4_HUMAN
(4)
IF4A1_HUMAN
(4)
H2AJ_HUMAN
(4)
MDHC_HUMAN
(4)
FAM3C_HUMAN
(4)
TRFL_HUMAN
(4)
A4_HUMAN
(4)
HS90B_HUMAN
(4)
PSB1_HUMAN
(4)
MYH3_HUMAN
(4)
SPTN1_HUMAN
(4)
G6PI_HUMAN
(4)
LEG3_HUMAN
(4)
POTEJ_HUMAN
(4)
TCPB_HUMAN
(4)
TPIS_HUMAN
(4)
TITIN_HUMAN
(4)
K1C10_HUMAN
(4)
1433B_HUMAN
(4)
RAB15_HUMAN
(4)
IF2B_HUMAN
(4)
G3P_HUMAN
(4)
ENSEMBL ID
ENSG00000170477
(25)
ENSG00000229353
(5)
ENSG00000247315
(3)
ENSG00000147251
(1)
CHEBI ID
CHEBI:17596
(32)
CHEBI:16704
(31)
CHEBI:16750
(29)
CHEBI:16335
(27)
CHEBI:15891
(26)
CHEBI:17562
(26)
CHEBI:16919
(25)
CHEBI:17368
(25)
CHEBI:16708
(23)
CHEBI:18211
(23)
CHEBI:15354
(22)
CHEBI:16040
(22)
CHEBI:30915
(22)
CHEBI:16566
(21)
CHEBI:30769
(21)
CHEBI:17750
(21)
CHEBI:17568
(21)
CHEBI:18344
(20)
CHEBI:16393
(20)
CHEBI:16737
(20)
CHEBI:17154
(20)
CHEBI:16914
(19)
CHEBI:17775
(19)
CHEBI:7916
(19)
CHEBI:16020
(19)
CHEBI:28044
(19)
CHEBI:24813
(18)
CHEBI:17895
(18)
CHEBI:16828
(18)
CHEBI:15760
(18)
Metabolite Name
Adenosine
(39)
Guanosine
(36)
Creatine
(34)
Oleamide
(32)
Adenine
(32)
Hypoxanthine
(31)
Inosine
(31)
L-Phenylalanine
(30)
Spermidine
(29)
L-Histidine
(29)
Indole
(28)
L-Tryptophan
(28)
Guanine
(28)
Choline
(28)
L-Tyrosine
(27)
Taurine
(27)
Uridine
(27)
Uracil
(26)
Cytidine
(26)
Pantothenic acid
(25)
L-Proline
(25)
Betaine
(23)
Phytosphingosine
(23)
Azelaic acid
(23)
L-Lysine
(23)
Thymine
(22)
Kynurenic acid
(22)
Benzoic acid
(22)
Sphinganine
(22)
Cytosine
(22)
First Public Date
2025
(4)
2026
(1)
2024
(1)
2022
(1)
2021
(1)
2014
(1)
Modification
15.994915
(15)
57.021464
(15)
2x(15)N labeled L-lysine
(11)
-17.026549
(10)
42.010565
(10)
4x(15)N labeled L-arginine
(9)
N6
(5)
4
(5)
45.029395
(4)
71.037114
(4)
6.020129
(3)
4-tetrahydrothiazine-3-carboxylic acid
(3)
10.008269
(2)
-18.010565
(2)
N6-dimethyl-L-lysine
(2)
Not available
(2)
26.01565
(1)
Methionine
(1)
31.989829
(1)
0.984016
(1)
79.966331
(1)
3''
(1)
3x(2)H labeled N6-acetyl-L-lysine
(1)
4x(2)H labeled dimethylated residue
(1)
58.005479
(1)
6x(2)H labeled dimethylated L-arginine
(1)
57.02146
(1)
15.99491
(1)
Study type
Transcription profiling by array
(28)
RNA-seq of coding RNA
(7)
Proteomic profiling by mass spectrometer
(3)
ChIP-seq
(2)
Animal - High-throughput sequencing
(1)
ChIP-chip by array
(1)
Comparative genomic hybridization by array
(1)
Other
(1)
RNA-seq of total RNA
(1)
Release Date
2021
(32)
2025
(31)
2023
(26)
2022
(26)
2024
(25)
2019
(20)
2020
(18)
2017
(18)
2016
(16)
2015
(15)
2012
(13)
2018
(12)
2010
(11)
2009
(11)
2014
(10)
2013
(8)
2011
(8)
2026
(4)
2008
(2)
2006
(1)
2003
(1)
Lab affiliation
Wageningen University
(37)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4
(23)
Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France
(22)
Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631
(18)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea.
(12)
Biomolecular characterization unit, Center for Sustainable Resource Science, RIKEN
(11)
Donnelly Centre for Cellular and Biomolecular Research, Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada
(10)
Proteomics Core Facility, School of Science, National and Kapodistrian University of Athens, Athens, Greece
(9)
Brigham and Women's Hospital, Harvard Medical School
(8)
Paris-Saclay Institute of Neuroscience, Team Melki, CNRS, Gif-sur-Yvette, France
(8)
General and molecular microbiology, Institute for chemistry and biology of the marine environment (ICBM), Carl von Ossietzky University of Oldenburg, Oldenburg, Germany
(8)
Department of Cell Biology, Harvard Medical School, Boston MA 02115 USA
(7)
Wellcome Trust Sanger Institute
(7)
Leibniz Institute of Plant Biochemistry, Department Biochemistry of Plant Interactions, Weinberg 3, 06120 Halle (Saale), Germany
(6)
School of Biochemistry, Faculty of Life Sciences, University of Bristol,UK
(6)
Department of Biochemistry, Biomedical Sciences Building, University of Bristol, Bristol, United Kingdom
(6)
Forest Products Laboratory, Institute for Microbial and Biochemical Sciences, USDA
(6)
Department of Entomology,Institute of Vegetables and Flowers,Chinese Academy of Agriculture Sciences,Beijing,100081,China
(6)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic
(6)
Bioanalytical Mass Spectrometry Research Group, Chemistry Department, Universite du Quebec a Montreal (UQAM), Montreal (Quebec), Canada
(5)
Mass Spectrometry Facility, Department of Chemistry and Biochemistry, San Francisco State University, USA
(5)
Department of Cell Biology, Harvard Medical School, Boston, MA 02115 USA
(5)
Dept. Proteomics and Signal Transduction Director at the Max-Planck Institute of Biochemistry
(5)
Biochemistry
(5)
Clinical Division of Fish Medicine, University of Veterinary Medicine, Vienna, Austria
(5)
ETH Zürich Institute of Molecular Systems Biology HPM F43 Otto-Stern-Weg 3 8093 Zürich Switzerland
(5)
Research Group Mitochondrial Disorders, Institute of Human Genetics, Technische Universität München, München, Germany
(5)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute of Biomedical Research
(5)
Center for Reproductive Evolution, Biology Department, Syracuse University
(5)
Max Planck Institute for Molecular Biomedicine Bioanalytical Mass Spectrometry Röntgenstr. 20 48149 Münster Germany
(5)
Tags
xref:PubMed:40054466
(2)
xref:PubMed:40185715
(1)
xref:PubMed:19536202
(1)
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A comparison of the accuracy of iTRAQ quantification by nLC-ESI MSMS and nLC-MALDI MSMS methods.
Not available
S-EPMC2880794
|
biostudies-literature
Cite
Deep vs. Shallow Learning-based Filters of MSMS Spectra in Support of Protein Search Engines.
Not available
S-EPMC8370709
|
biostudies-literature
Cite
Lactulose: mannitol diagnostic test by HPLC and LC-MSMS platforms: considerations for field studies of intestinal barrier function and environmental enteropathy.
Not available
S-EPMC4222705
|
biostudies-literature
Cite
Development and validation of an LC-MSMS method to quantify creatinine from dried blood spots.
Not available
S-EPMC10950697
|
biostudies-literature
Cite
LC-MSMS based screening of emerging pollutant degradation by different peroxidases.
Not available
S-EPMC6883607
|
biostudies-literature
Cite
DSSO,Xlink,LC-MSMS - DSSO as linker, study of protein-protein interaction by LC-MSMS
DSSO as linker, study of protein-protein interaction by LC-MSMS
ORGANISM(S):
Streptococcus pyogenes STAB901
2020-04-15
|
PXD012466
|
Pride
Xlink
Dsso
Lc-msms
Cite
Detection of crosslinks within and between proteins by LC-MALDI-TOFTOF and the software FINDX to reduce the MSMS-data to acquire for validation.
Not available
S-EPMC3377668
|
biostudies-literature
Cite
Dilute, derivatise and shoot: Measurement of urinary free metanephrines and catecholamines as ethyl derivatives by LC-MSMS.
Not available
S-EPMC11322754
|
biostudies-literature
Cite
Development and Validation of the Motivations for Selection of Medical Study (MSMS) Questionnaire in India.
Not available
S-EPMC5173381
|
biostudies-literature
Cite
study of protein-protein interaction by LC-MSMS
DSSO as linker, study of protein-protein interaction by LC-MSMS
ORGANISM(S):
Homo sapiens (Human)
2021-09-09
|
PXD019868
|
Pride
Xlink
Dsso
Lc-msms
Cite
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