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GenomicsExamination of whole genome DNA methylation status of two chicken breeds
We report the genome-wide DNA methylation mapping of chicken by methylated DNA immunoprecipitation following by highthroughput sequencing, and the gene expression profile of chicken by RNA-seq. For meDIP-seq, about 17,202,074 to 27,501,760 reads were generated for the tissue and liver tissues of the...
ORGANISM(S): Gallus gallus 
2010-04-02 | E-GEOD-21167 | biostudies-arrayexpress
ProteomicsLC-MS/MS to identify WT, 8NQ, N91/104/309/322Q and N91/104/309/322 B7H3 interaction
The specific N-glycans of glycoproteins play key roles in regulating protein localization, stability and activity. B7H3, an immune checkpoint molecule, is a highly N-glycosylated membrane protein. However, the key glycosylated asparagine (Asn) residues that mediate the function of the B7H3 protein a...
ORGANISM(S): Homo sapiens (Human) 
2025-03-27 | PXD059437 | Pride
Lc-ms/ms B7h3 
ProteomicsComparative Proteomic Analysis of Fusobacterium nucleatum Clinical Isolates from Brain Abscess Patients versus the Standard Strain ATCC 25586
Comparative proteomic analysis of Fusobacterium nucleatum clinical strains isolated from brain abscess patients and the standard strain ATCC 25586, using label-free quantification (LFQ) to identify differentially expressed proteins and explore pathogenic mechanisms related to brain abscess.
ORGANISM(S): Fusobacterium Nucleatum Subsp. Nucleatum Atcc 25586 
2026-03-23 | PXD076046 |
ProteomicsClinical characterization and proteomic profiling of lean nonalcoholic fatty liver disease
To investigate the proteomic features in lean subjects with NAFLD, and to identify possible plasma proteins that provide potential application for diagnosing of NAFLD in lean individuals. Participants with or without NAFLD were divided into an overweight NAFLD group, an overweight control group, a l...
ORGANISM(S): Homo Sapiens 
2022-07-21 | PXD035514 |
ProteomicsProteins interacting with GBP5 and RSV-SH protein
HEK293T were transfected with RSV-SH-HA, GBP5-HA or VR1012(empty vector) respectively for 48 h and then harvested. Co-IP assay were performed with HA beads (Roche, catalog no. 11867423001), the elution was analyzed by mass spectrum. Mass spectrum analysis were performed by the national center for pr...
ORGANISM(S): Homo Sapiens 
2024-08-06 | PXD054621 |
ProteomicsH3K4me1 directs H3K36me2 and H3K36me3 deposition in land plants
Monomethylation of histone H3 lysine 4 (H3K4me1) marks enhancers in mammals. However, the function of H3K4me1 in plants remains largely unclear. Here, we analyzed the genome-wide distribution of H3K4me1 in diverse species across evolution, revealing a distinctive H3K4me1 distribution pattern in land...
ORGANISM(S): Oryza Sativa 
2025-09-23 | PXD068723 |
Proteomicscomparative proteomics studies of the wild strain SC1401 and the tfoX deficient strain
Natural transformation, as one of the horizontal gene transfer (HGT) modes of bacteria, allows bacteria to actively uptake foreign DNA under natural conditions and integrate it into their genome through homologous recombination. Natural transformation plays an vital role in the rapid spread of patho...
ORGANISM(S): Glaesserella Parasuis 
2022-03-17 | PXD032382 |
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