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Transcriptomics following CRISPR KO of individual DUBs or inhibition of DUBs with small molecule inhibitors
CRISPR KO RNA-seq data: To generate knockouts, we used a commercially available arrayed CRISPR-Cas9 library targeting 81 out of ~100 DUBs and 13 additional proteins in the ubiquitin-proteasome system, including ubiquitin-like proteins; the library was constructed with four, pooled, guides per target...
ORGANISM(S): Homo sapiens 
2021-11-03 | GSE187008 | GEO
Genomics
CRISPR DUBs screen beta1 Integrin surface level
His-Biotin-His Ubiquitin was overexpressed in various fission yeast (S. pombe) genetic backgrounds to identify ubiqutinated proteins. Normalizing to bait (ubiquitin) across samples provided insight into relative changes in ubiquitination with loss of deubiquitinases (DUBs), yielding putative DUB sub...
ORGANISM(S): Schizosaccharomyces pombe 
2017-06-09 | PXD001767 | Pride
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