Duncan J J - OmicsDI

Show results for

Unknown (2617)
Models (69)
Transcriptomics (60)
Proteomics (50)
Genomics (27)
Metabolomics (17)
Multiomics (3)
Genomic (1)

Organisms

Homo sapiens (101)
Andropogon gerardi (40)
Bacteria (40)
Canis lupus familiaris (40)
Cnidaria (40)
Cricetulus griseus (40)
Eukaryota (40)
Fasciola (40)
Hepatitis B virus (40)
Human betaherpesvirus 5 (40)
Madurella mycetomatis (40)
Mesocricetus auratus (40)
Miscanthus x giganteus (40)
Mus musculus (40)
Mycobacterium tuberculosis (40)
Orthoflavivirus (40)
Panicum virgatum (40)
Penium margaritaceum (40)
Platyhelminthes (40)
Mus musculus (26)
Arabidopsis thaliana (8)
Rattus norvegicus (4)
Heterocephalus glaber (3)
Mammalia (2)
Campylobacter jejuni (2)
Mus caroli (1)
Schizosaccharomyces pombe 972h- (1)
mouse gut metagenome (1)
Zea mays (1)
Mycobacterium tuberculosis (1)

Organisms

Mus musculus (4)
Campylobacter jejuni (1)
Severe acute respiratory syndrome coronavirus 2 (1)

Repository

biostudies-arrayexpress (70)
BioModels (69)
pride (40)
MetaboLights (14)
EGA (8)
MassIVE (8)
ENA (6)
geo (4)
GNPS (3)
iProX (2)
dbGaP (1)

Tissue

Cell culture (10)
Kidney cell (6)
Plant cell (5)
Liver (4)
Leaf (3)
Shoot (3)
Embryo (2)
Endosperm (2)
Epithelial cell (2)
Root (2)
Whole body (2)
Anther (1)
Blood vessel (1)
Brain (1)
Breast cancer cell (1)
Gastrointestinal stromal tumor cell (1)
Pollen (1)
Primary cell (1)
Venom (1)

Disease

Breast cancer (2)
Malignant neoplasm of ovary (2)
Normal (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (40)
Shotgun proteomics (23)
Bottom-up proteomics (15)
Mass spectrometry (11)
NMR spectroscopy (3)
Data-dependent acquisition (3)
Mass spectrometry assay (2)
Top-down proteomics (2)
NextSeq 500, Illumina HiSeq 4000, ILLUMINA (1)
Illumina MiSeq (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
Glycoproteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (8)
Liquid Chromatography MS - positive - reverse phase (8)
Illumina HiSeq 2500 (5)
Q Exactive (5)
Illumina HiSeq 2000 (4)
Illumina Genome Analyzer II (2)
6520A Quadrupole Time-of-Flight LC/MS (2)
Orbitrap Fusion Lumos (2)
Bruker (2)
Liquid Chromatography MS - negative - reverse phase (2)
10X Genomics Chromium (1)
Illumina Genome Analyzer IIx (1)
NextSeq 2000 (1)
NextSeq 500 (1)
LTQ FT (1)
MaXis (1)
LTQ Orbitrap Velos (1)
Orbitrap Exploris 480 (1)
Flow injection analysis MS – POS (1)
Liquid Chromatography MS – NEG (1)
Liquid Chromatography MS – POS (1)
Gas Chromatography MS - positive (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2005 (66)
2023 (14)
2025 (14)
2016 (12)
2024 (10)
2014 (10)
2011 (10)
2020 (10)
2013 (9)
2021 (8)
2012 (8)
2008 (7)
2015 (6)
2018 (5)
2022 (4)
2007 (4)
2010 (3)
2017 (2)
2009 (2)
2026 (2)
2019 (2)

UNIPROT ID/AC

Q9BQG2 (66)
B3KXN9 (66)
Q53HM1 (66)
Q86SK9 (66)
E9KL42 (66)
Q3I5F7 (66)
P33897 (66)
Q99884 (66)
A8MU28 (66)
P35219 (66)
Q5FC00 (66)
Q15274 (66)
Q9NX14 (66)
Q9Y345 (66)
Q86YT5 (66)
Q53H96 (66)
Q9NWU1 (66)
Q96C36 (66)
Q9NRX3 (66)
O75610 (66)
Q6UWQ5 (66)
Q96KJ9 (66)
Q9UEF7 (66)
Q8TF08 (66)
Q7Z4L0 (66)
Q7GXZ8 (66)
Q7GXY8 (66)
Q9H0N5 (66)
Q6YFQ2 (66)
Q6FGA0 (66)

CHEBI ID

CHEBI:29108 (68)
CHEBI:58235 (66)
CHEBI:36986 (66)
CHEBI:58052 (66)
CHEBI:57880 (66)
CHEBI:57373 (66)
CHEBI:28508 (66)
CHEBI:28095 (66)
CHEBI:57795 (66)
CHEBI:58480 (66)
CHEBI:58376 (66)
CHEBI:57310 (66)
CHEBI:9407 (66)
CHEBI:33569 (66)
CHEBI:57781 (66)
CHEBI:57812 (66)
CHEBI:16769 (66)
CHEBI:58044 (66)
CHEBI:350546 (66)
CHEBI:16577 (66)
CHEBI:57462 (66)
CHEBI:57973 (66)
CHEBI:35291 (66)
CHEBI:16302 (66)
CHEBI:50211 (66)
CHEBI:17336 (66)
CHEBI:46245 (66)
CHEBI:57340 (66)
CHEBI:15035 (66)
CHEBI:29747 (66)

Metabolite Name

D-Glucose (4)
Citric acid (4)
Tris(2-butoxyethyl) phosphate (3)
L-Lactic acid (3)
Pyruvic acid (3)
Glycine (3)
3-Hydroxyisovaleric acid (3)
Succinate (3)
L-Alanine (3)
Elaidic acid (3)
Cholic acid (3)
Xanthine (3)
L-Valine (3)
L-Isoleucine (3)
L-Tyrosine (3)
L-Phenylalanine (3)
Dibutyl phthalate (DBP) (2)
Lyso-PC(16:0) (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
Ethanol (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
Lactulose (2)
Threonic acid (2)
Dimethylglycine (2)
Fumarate (2)
Cystine (2)
Pyruvate (2)

First Public Date

2013 (2)
2021 (1)
2017 (1)
2016 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (2)
Logical model (1)

Lab affiliation

Principal Investigator Centre for Targeted Protein Degradation, School of Life Sciences (4)
Director of ARC center in PlantEnergy Bilology at School of Molcular Science at Univerity of Western Australia (2)
Principal Investigator Centre for Targeted Protein Degradation (2)
Principal Investigator • Centre for Targeted Protein Degradation (2)
1Lester and Sue Smith Breast Center and Dan L. Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX 77030, USA (1)
ARC Centre of Excellence in Plant Energy Biology at The University of Western Australia (1)
ARC Centre of Excellence in Plant Energy Biology, M316, 35 Stirling Hwy, 6009, WA, Australia Faculty of Science, The University of Western Australia (1)
ARC Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, The University of Western Australia (1)
ARC Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, The University of Western Australia, Australia and Harry Perkins Institute of Medical Research, Perth, Western Australia, Australia (1)
ARC Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, The University of Western Australia, M316, Perth,WA, 6009, Australia (1)
ARC Centre of Excellence in Plant Energy Biology, University of Western Australia, Bayliss Building M316, Crawley, WA 6009, Australia (1)
Cancer Biology Department, Fox Chase Cancer Center, Philadelphia, PA, USA (1)
Cancer Biology, Fox Chase Cancer Center, Philadelphia, Pennsylvania, United States (1)
Cancer Signaling & Microenvironment Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania, United States (1)
Cancer Signaling and Epigenetics Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania, United States (1)
Cancer Signaling and Microenvironment Program,Fox Chase Cancer Center, Philadelphia, PA, USA (1)
Caris Science Inc (1)
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain (1)
Centre of Excellence in Plant Energy Biology, Department of Molecular Sciences, University of Western Australia (1)
Department of Biochemistry and Microbiology, L-Probe Lab Ghent University (1)
Department of Marine, Earth and Atmospheric Sciences, North Carolina State University, Raleigh, NC 27695 (1)
Department of Microbiology, Immunology and Pathology; Colorado State University; Fort Collins, CO, USA (1)
Department of Oral Biology and Pathology, Faculty of Odontology, Malmö University, Malmö, Sweden Genovis AB, Kävlinge, Sweden (1)
Director | ARC CoE Plant Energy Biology, The University of Western Australia (1)
Equipe ProbiHôte Unité MICALIS Centre INRAE Domaine de Vilvert 78350 Jouy en Josas Tél: 01 34 65 24 69 (1)
Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. Otto-Hahn-Straße 6b 44227 Dortmund, Germany P: +49 (0)2 31.13 92-100 F: +49 (0)2 31.13 92-200 www.isas.de (1)
Lund University Sölvegatan 35 223 62 – Lund Sweden (1)
Molecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, PA, USA (1)
Napier University, Edinburgh, Scotland (1)
Newcastle University Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK (1)

IsPrivate

False (69)

Model Flag

Non Kinetic (66)

Classification

viruses (1)
bacteria (1)

Study type

Transcription profiling by array (34)
ChIP-seq (10)
RNA-seq of coding RNA (10)
RNA-seq of coding RNA from single cells (8)
Methylation profiling by high throughput sequencing (2)
Differential (1)
ChIP-chip by array (1)
Genotyping by array (1)
Comparative genomic hybridization by array (1)
Methylation profiling by array (1)

Release Date

2022 (281)
2021 (264)
2025 (263)
2023 (260)
2020 (236)
2024 (217)
2018 (193)
2019 (185)
2017 (134)
2014 (121)
2016 (106)
2015 (106)
2013 (76)
2012 (75)
2011 (45)
2010 (29)
2026 (29)
2008 (18)
2009 (14)
2007 (10)
2005 (7)
2006 (5)
2004 (3)
2003 (3)
2002 (3)
2000 (3)
1997 (1)

Previous page
1 / 285
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 285
Next page

Sort by:

Relevance

Page size

J-Western forms of Helicobacter pylori cagA constitute a distinct phylogenetic group with a widespread geographic distribution.

Not available

S-EPMC3294863 | biostudies-literature

[E-MTAB-706] Quantitative RNA-seq analysis of the transcriptome of Campylobacter jejuni

RNA-seq analysis of the transcriptome of wild type C.jejuni NCTC11168, and of an rpoN mutant of the same strain, both grown in vitro. ArrayExpress Release Date: 2011-06-14 Publication Title: Quantitative RNA-seq analysis of the transcriptome of Campylobacter jejuni Publication Author List: Roy R. Ch...

ORGANISM(S): Campylobacter jejuni

2011-07-14 | GSE30621 | GEO

Duncan Macdonald

Not available

S-EPMC1124879 | biostudies-literature

[E-MTAB-442] ChIP-seq of mouse liver with no antibody to provide input sequences for ChIP experiments on C57BJ/6J mice

Odom_mouse_C57BL6J_input This experiment provides chromatin immunoprecipitation input sequences (i.e. no antibody was added during the ChIP protocol), suitable for use as input for ChIP experiments on C57BJ/6J mice. ArrayExpress Release Date: 2011-03-01 Publication Title: Pol III occupancy of tRNA g...

ORGANISM(S): Mus musculus

2011-07-14 | GSE30604 | GEO

RNA-seq of paired granulosa cells and morulas or blastocysts from naturally and superovulated 3M old mice

Two major factors contributing to reduced fertility is use of exogenous hormones and old age. We use mouse model to study transcriptional and cell-cell communication changes upon superovulation and ageing in female reproductive cells - oocytes (OC) - and somatic cells - granulosa (GC) - surrounding ...

ORGANISM(S): Mus musculus

2024-09-22 | E-MTAB-13480 | biostudies-arrayexpress

James George Duncan

Not available

S-EPMC1125790 | biostudies-literature

Pseudomonas syringae infectivity correlates to altered transcript and metabolite levels of Arabidopsis Mediator mutants

Rapid metabolic responses to pathogens are essential for plant survival and depend on numerous transcription factors. Mediator is the major transcriptional co-regulator for integration and transmission of signals from transcriptional regulators to RNA polymerase II. Using four Arabidopsis Mediato...

2024-02-19 | MTBLS8105 | MetaboLights

Production and Use of Customizable Agarose Molds for Scaffold-Free Mouse Ovarian Follicle Culture.

Not available

S-EPMC12688028 | biostudies-literature

MDR1 Drug Efflux Pump Promotes Acquired and Intrinsic Resistance to Protein Degraders in Cancer Cells

PROTACs (Proteolysis-Targeting Chimeras) represent a revolutionary new class of drugs that selectively degrade proteins of interest from cells. PROTACs targeting oncogenes are avidly being explored for cancer therapies, with several currently in clinical trials. Drug resistance represents a signif...

ORGANISM(S): Homo sapiens (Human)

2022-10-06 | PXD029233 | Pride

Resveratrol Directly Controls the Activity of Neuronal Ryanodine Receptors at the Single-Channel Level.

Not available

S-EPMC6980486 | biostudies-literature

Previous page
1 / 285
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 285
Next page

Sort by:

Relevance

Page size

2842 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

CHEBI ID

Metabolite Name

First Public Date

Modelling Approach

Lab affiliation

Tags

IsPrivate

Model Flag

Classification

Study type

Release Date

OmicsDI is part of the ELIXIR infrastructure

Tweets