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TranscriptomicsEpigenetic therapy for Friedreich ataxia.
We set out to investigate whether a histone deacetylase inhibitor (HDACi) would be effective in an in vitro model for the neurodegenerative disease Friedreich ataxia (FRDA) and to evaluate safety and surrogate markers of efficacy in a phase I clinical trial in patients. In the neuronal cell model, H...
ORGANISM(S): Homo sapiens 
2015-01-29 | E-GEOD-65399 | biostudies-arrayexpress
GenomicsAn epigenetic memory of pregnancy in the mouse mammary gland
Pregnancy is the major modulator of mammary gland activity. It induces a tremendous expansion of the mammary epithelium and the generation of alveolar structures for milk production. Anecdotal evidence from multiparous humans indicates that the mammary gland may react less strongly to the first preg...
ORGANISM(S): Mus musculus 
2015-05-15 | E-GEOD-67386 | biostudies-arrayexpress
Genomicsbulk RNAseq of Ccd18-Co cell line treated with cytokine mix and/or epigenetic modulator
bulk RNAseq of Ccd18-Co cell line treated with cytokine mix and/or epigenetic modulator
PRJNA1321909 | ENA
GenomicsArchitecture of Epigenetic Reprogramming Following Twist1 Mediated Epithelial-Mesenchymal Transition [DREAM-seq]
Purpose: to characterize epigenetic changes following Twist1 mediated Epithelial-Mesenchymal Transition in human Methods: we characterized the epigenetic and transcriptome landscapes using whole genome transcriptome analysis by RNA-seq, DNA methylation by digital restriction enzyme analysis of meth...
ORGANISM(S): Homo sapiens 
2013-12-10 | E-GEOD-53025 | biostudies-arrayexpress
GenomicsPML-RARa/RXR alters the epigenetic landscape in Acute Promyelocytic Leukemia
Many different molecular mechanisms have been suggested to be associated with PML-RAR dependent transformation of haematopoietic progenitors. Here, we investigated the role of PML-RAR and RXR in the organization of epigenetic structures at a genome-wide level. We identified 2722 high confidence PML-...
ORGANISM(S): Homo sapiens 
2009-12-17 | E-GEOD-18886 | biostudies-arrayexpress
GenomicsStudy the differential gene expression in SK-MEL-147 cells treated with different epigenetic modulator
Study the differential gene expression in SK-MEL-147 cells treated with different epigenetic modulator
PRJNA694631 | ENA
TranscriptomicsThe Wilms' tumour 1 transcription factor regulates epigenetic states via DNA methyltransferase 3A
The Wilms' tumour 1 transcription factor regulates epigenetic states via DNA methyltransferase 3A. The data consists of two Nimblegen promoter/CpG island microarrays hybridized with MCIP DNA immunoprecipitated from either a HEK293-derived cell line expressing a heterologous WT1 cDNA (W210) or a cont...
ORGANISM(S): Homo sapiens 
2012-11-05 | E-GEOD-39713 | biostudies-arrayexpress
GenomicsArginine acts as an epigenetic modulator to regulate mitochondrial function
Arginine acts as an epigenetic modulator to regulate mitochondrial function
PRJNA626456 | ENA
TranscriptomicsSanguinarine, putative anticancer therapeutic, interacts, modulates and transcripts in the context of chromatin
DNA-binding anticancer agents cause alteration in chromatin structure and dynamics. Here, we report the dynamic interaction of the DNA intercalator and potential anticancer, plant alkaloid, sanguinarine (SGR) with chromatin. Association of SGR with different levels of chromatin structure was found t...
ORGANISM(S): Homo sapiens 
2011-09-11 | E-GEOD-14777 | biostudies-arrayexpress
TranscriptomicsArchitecture of Epigenetic Reprogramming Following Twist1 Mediated Epithelial-Mesenchymal Transition [RNA-seq]
Purpose: to characterize epigenetic changes following Twist1 mediated Epithelial-Mesenchymal Transition in human Methods: we characterized the epigenetic and transcriptome landscapes using whole genome transcriptome analysis by RNA-seq, DNA methylation by digital restriction enzyme analysis of meth...
ORGANISM(S): Homo sapiens 
2013-12-10 | E-GEOD-53024 | biostudies-arrayexpress
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