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TranscriptomicsMapping and analysis of chromatin state dynamics in nine human cell types (gene expression)
Chromatin profiling has emerged as a powerful means for annotating genomic elements and detecting regulatory activity. Here we generate and analyze a compendium of epigenomic maps for nine chromatin marks across nine cell types, in order to systematically characterize cis-regulatory elements, their ...
ORGANISM(S): Homo sapiens 
2011-03-22 | E-GEOD-26312 | biostudies-arrayexpress
TranscriptomicsTranscription profile of pho90_OX strain during growth in no phosphate medium
Depletion of essential nutrients triggers regulatory programs that prolong cell growth and survival. Starvation-induced processes increase nutrient transport, mobilize nutrient storage, and recycle nutrients between cellular components. This leads to an effective increase in intracellular nutrients...
ORGANISM(S): Saccharomyces cerevisiae 
2014-09-24 | E-GEOD-61665 | biostudies-arrayexpress
TranscriptomicsTranscription profile of phm3 damp strain during growth in no phosphate medium
Depletion of essential nutrients triggers regulatory programs that prolong cell growth and survival. Starvation-induced processes increase nutrient transport, mobilize nutrient storage, and recycle nutrients between cellular components. This leads to an effective increase in intracellular nutrients...
ORGANISM(S): Saccharomyces cerevisiae 
2014-09-24 | E-GEOD-61666 | biostudies-arrayexpress
TranscriptomicsTranscription profile of BY4741 (Wild type) during growth in no phosphate medium
Depletion of essential nutrients triggers regulatory programs that prolong cell growth and survival. Starvation-induced processes increase nutrient transport, mobilize nutrient storage, and recycle nutrients between cellular components. This leads to an effective increase in intracellular nutrients...
ORGANISM(S): Saccharomyces cerevisiae 
2014-09-24 | E-GEOD-61661 | biostudies-arrayexpress
TranscriptomicsTranscription profile of pho85 damp strain during growth in no phosphate medium
Depletion of essential nutrients triggers regulatory programs that prolong cell growth and survival. Starvation-induced processes increase nutrient transport, mobilize nutrient storage, and recycle nutrients between cellular components. This leads to an effective increase in intracellular nutrients...
ORGANISM(S): Saccharomyces cerevisiae 
2014-09-24 | E-GEOD-61663 | biostudies-arrayexpress
TranscriptomicsMicroRNA expression in the newborn mouse cochlea and vestibule
MicroRNAs (miRNAs) inhibit the translation of target mRNAs and affect, directly or indirectly, the expression of a large portion of the protein-coding genes. This study focuses on miRNAs that are expressed in the mouse cochlea and vestibule, the two inner ear compartments. To identify miRNAs that ar...
ORGANISM(S): Mus musculus 
2010-06-20 | E-GEOD-15496 | biostudies-arrayexpress
TranscriptomicsDecoding human cytomegalovirus using ribosome profiling
The human cytomegalovirus (HCMV) genome was sequenced 20 years ago. However, like other complex viruses, our understanding of its protein coding potential is far from complete. Here, we use ribosome profiling and transcript analysis to experimentally define the HCMV translation products and follow t...
ORGANISM(S): Human Herpesvirus 5 
2012-10-17 | E-GEOD-41605 | biostudies-arrayexpress
TranscriptomicsPharyngeal mesoderm regulatory network controls cardiac and head muscle morphogenesis
The search for developmental mechanisms driving vertebrate organogenesis has paved the way toward a deeper understanding of birth defects. During embryogenesis, parts of the heart and craniofacial muscles arise from pharyngeal mesoderm (PM) progenitors. Here, we reveal a hierarchical regulatory netw...
ORGANISM(S): Mus musculus 
2012-11-26 | E-GEOD-42389 | biostudies-arrayexpress
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