Esteban E E - OmicsDI

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Unknown (836)
Transcriptomics (59)
Proteomics (29)
Genomics (16)
Models (3)
Metabolomics (3)

Organisms

Homo sapiens (51)
Mus musculus (26)
Rattus norvegicus (4)
Clostridium autoethanogenum (4)
Saccharopolyspora erythraea (2)
Macaca fascicularis (2)
Escherichia coli (2)
Methanothermobacter marburgensis str. Marburg (1)
Methanothermobacter thermautotrophicus (1)
Methanothermobacter thermautotrophicus str. Delta H (1)
Pan troglodytes (1)
synthetic construct (1)
Caenorhabditis elegans (1)
Escherichia coli K-12 (1)
Arabidopsis thaliana (1)
Cnidaria (1)
Cricetulus griseus (1)
Millepora complanata (1)
Schmidtea mediterranea (1)
Streptomyces inhibens (1)

Repository

biostudies-arrayexpress (72)
pride (26)
BioModels (3)
MetaboLights (3)
EGA (2)
PAXDB (2)
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ENA (1)

Tissue

Cell culture (7)
Permanent cell line cell (4)
Prokaryotic cell (4)
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B cell (1)
Brain (1)
Cell suspension culture (1)
Fibroblast (1)
Macrophage (1)
Small intestine (1)
Small intestine epithelium (1)
Tear (1)
White adipose tissue (1)

Disease

Ankylosing spondylitis (1)
Birdshot chorioretinopathy (1)
Melanoma (1)
Parasitic infectious disease (1)
Parkinson's disease (1)
Wiskott-Aldrich syndrome (1)

Technology Type

Mass Spectrometry (26)
Shotgun proteomics (13)
Affinity purification coupled with mass spectrometry proteomics (6)
SWATH MS (6)
Mass spectrometry (3)
Bottom-up proteomics (3)
All-ion fragmentation (1)
Data-independent acquisition (1)
Gel-based experiment (1)

Instrument Platform

Illumina HiSeq 1500 (8)
NextSeq 550 (3)
UltrafleXtreme MALDI-TOF MS (Bruker) (2)
Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2500 (1)
RSLCnano UHPLC/Q-Exactive (1)
MS Imaging - (1)
4700 Proteomic Analyzer (1)

Publication Date

2015 (20)
2022 (12)
2021 (10)
2013 (10)
2026 (9)
2012 (9)
2014 (8)
2019 (6)
2010 (5)
2011 (4)
2020 (3)
2025 (3)
2018 (3)
2016 (2)
2024 (2)
2009 (1)

UNIPROT ID/AC

1433B_MOUSE (2)
1433E_MOUSE (2)
1433F_MOUSE (2)
1433G_MOUSE (2)
1433T_MOUSE (2)
1433Z_MOUSE (2)
2AAA_MOUSE (2)
2AAB_MOUSE (2)
3HIDH_MOUSE (2)
4F2_MOUSE (2)
5NT3B_MOUSE (2)
5NTC_MOUSE (2)
6PGD_MOUSE (2)
6PGL_MOUSE (2)
A16A1_MOUSE (2)
AAAT_MOUSE (2)
AATC_MOUSE (2)
AATM_MOUSE (2)
ABCB7_MOUSE (2)
ABCE1_MOUSE (2)
ABCF1_MOUSE (2)
ABCF2_MOUSE (2)
ACACA_MOUSE (2)
ACAD9_MOUSE (2)
ACADL_MOUSE (2)
ACADM_MOUSE (2)
ACADS_MOUSE (2)
ACBP_MOUSE (2)
ACINU_MOUSE (2)
ACL6A_MOUSE (2)

CHEBI ID

CHEBI:10049 (3)
CHEBI:10066 (3)
CHEBI:10067 (3)
CHEBI:10246 (3)
CHEBI:10261 (3)
CHEBI:10489 (3)
CHEBI:10491 (3)
CHEBI:10492 (3)
CHEBI:10493 (3)
CHEBI:10494 (3)
CHEBI:10495 (3)
CHEBI:10497 (3)
CHEBI:10499 (3)
CHEBI:10500 (3)
CHEBI:10529 (3)
CHEBI:10530 (3)
CHEBI:10531 (3)
CHEBI:10532 (3)
CHEBI:10533 (3)
CHEBI:10745 (3)
CHEBI:10866 (3)
CHEBI:10888 (3)
CHEBI:10925 (3)
CHEBI:10966 (3)
CHEBI:10986 (3)
CHEBI:11033 (3)
CHEBI:11063 (3)
CHEBI:11186 (3)
CHEBI:11192 (3)
CHEBI:11195 (3)

Metabolite Name

(+)-Plicamine (1)
(+)-Prosopinine (1)
(+/-)5-HEPE (1)
(+/-)5-HEPE / 5(S)-HEPE (1)
(11Z,14Z)-icosadienoic acid (1)
(13Z,16Z)-docosadienoic acid (1)
(15Z)-tetracosenoic acid (1)
(2E,4E)-3,8,8,8-tetrachloro-7-(4-chlorophenyl)-2-hydroxy-6-oxo-octa-2,4-dienoate (1)
(2S)-2-hydroxytetradecanoic acid (1)
(5Z,8Z,14Z)-11,12-dihydroxyicosatrienoic acid (1)
(6R)-10-Formyltetrahydropteroyldiglutamate (1)
(7Z,10Z,13Z,16Z,19Z)-docosapentaenoic acid (1)
(S)-N-methylcanadine (1)
1'H-5alpha-Cholest-2-eno[3,2-b]indole (1)
1-Deoxy-11beta-hydroxypentalenate (1)
1-Deoxypentalenate (1)
1-O-oleoyl-sn-glycero-3-phosphocholine (1)
1-Palmitoyl-2-(5-keto-8-oxo-6-octenoyl)-sn-glycero-3-phosphatidylcholine (1)
1-palmitoylglycerone 3-phosphate (1)
11beta-Hydroxy-6alpha,11-dimethylpregn-4-ene-3,20-dione (1)
13(S)-HpOTrE (1)
16-hydroxyphorbol 13-decanoate 12-palmitate (1)
17-Hydroxy-3-oxo-17alpha-pregna-1,4-diene-21-carboxylic acid, gamma-lactone (1)
17-Octadecynoic Acid (1)
17-[(Benzylamino)methyl]estra-1,3,5(10)-triene-3,17beta-diol (1)
17beta-Acetyl-1,2,3,4,6alpha,7alpha,10,12,13,14alpha,16,17-dodecahydro-3beta-hydroxy-10beta,13beta-dimethyl-5beta,8beta-etheno-15H-cyclopenta[a]phenanthrene-6,7-dicarboxylic anhydride acetate (1)
17beta-estradiol 3-sulfate (1)
2''-o-p-Coumaroylaloesin (1)
2-oxophytanic acid (1)
20,21,21-Trifluoro-3-methoxy-19-nor-17alpha-pregna-1,3,5(10),20-tetraen-17-ol (1)

IsPrivate

False (3)

Submitter Keywords

FROG (3)

First Public Date

2021 (1)

Modelling Approach

Constraint-based model (3)

Modification

Not available (1)

Study type

Transcription profiling by array (24)
RNA-seq of coding RNA (13)
ChIP-seq (11)
Methylation profiling by array (11)
Cell line - High-throughput sequencing (4)
Other (3)
ChIP-chip by tiling array (1)
Human - High-throughput sequencing (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
DNA-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2021 (133)
2022 (120)
2023 (113)
2025 (79)
2024 (79)
2020 (56)
2015 (53)
2019 (48)
2018 (38)
2017 (35)
2016 (31)
2014 (28)
2013 (23)
2010 (18)
2012 (14)
2011 (14)
2026 (9)
2006 (4)
2009 (3)
2002 (2)
2000 (2)
2008 (1)
2007 (1)
2005 (1)
2004 (1)
2001 (1)
1998 (1)

Lab affiliation

Faculty of Biology, Technion - Israel Institute of Technology (4)
BGI Research (3)
Australian Institute for Bioengineering and Nanotechnology (AIBN), The University of Queensland (2)
Australian Institute for Bioengineering and Nanotechnology (AIBN), The University of Queensland, Australia (2)
AIBN, University of Queensland (1)
Australian Institute for Bioengineering and Nanotechnolog (AIBN), The University of Queensland (1)
Australian Institute for Bioengineering and Nanotechnology, The University of Queensland (1)
Bioscience Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Kingdom of Saudi Arabia (1)
Genetics (1)
King Abdullah University of Science & Technology (KAUST), Biological Environmental Sciences and Engineering Division BESE, KAUST Environmental Epigenetics Program, Thuwal, Saudi Arabia. (1)
Laboratory of Integrative Biology, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences; Guangzhou, 510530, China. (1)
Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Strasse 10, 35043 Marburg, Germany Center for Synthetic Microbiology (SYNMIKRO), Karl-von-Frisch Strasse 10, 35043 Marburg, Germany (1)
Proteomics Service CIC bioGUNE Bizkaia Tech. Park Build. 800 Derio 48160 Spain (1)
Spanish National Cancer Research Center (CNIO) (1)
Technion, Israel institute of technology (1)
Universidad Autónoma de Querétaro (1)
Universitat de València, Facultad de Farmacia y Ciencias de la Alimentación, Área de Parasitología, Departamento de Farmacia y Tecnología Farmacéutica y Parasitología, Valencia, Spain. (1)
University of Cadiz (1)
Área de Parasitología, Departamento de Farmacia y Tecnología Farmacéutica y Parasitología, Facultad de Farmacia, Universitat de València, Spain (1)

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Effect of acetate during Escherichia coli switch from N-Acetyl Glucosamine to Malate

This experiment was performed to challenge E. coli response to acetate when switched from N-Acetyl Glucosamine (NAG) to malate as the main substrate. Here, E. coli BW25113 strain was grown in M9 medium complemented with 15 mM NAG, The cells were grown to mid-exponential phase in shake flasks at 37...

ORGANISM(S): Escherichia coli K-12

2026-05-12 | E-MTAB-16650 | biostudies-arrayexpress

Patterns of hypertension management in France in 2015: The ESTEBAN survey.

Not available

S-EPMC8029843 | biostudies-literature

Biosynthesis of novel non-proteinogenic amino acids β-hydroxyenduracididine and β-methylphenylalanine in Escherichia coli

Non-proteinogenic amino Q7 Q8 acids (npAAs) are valuable building blocks for the development of advanced pharmaceuticals and agrochemicals. The surge in interest in their synthesis is primarily due to the potential to enhance and diversify existing bioactive molecules. This can be achieved by alteri...

ORGANISM(S): Escherichia coli

2024-10-01 | PXD056235 | Pride