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TranscriptomicsTranscription profiling of Capsicum fruit ripening process
Pepper fruits at four different developmental stages were collected: early fruit [EF; 1 cm long; 7 days after pollination (dap)], mature green fruit (MG; 6-7 cm length; 20 dap), breaking or turning red fruit (BR; fruit are partially red; 35 dap), and red ripe fruit (RR; fully red; 40 dap). Tomato fr...
ORGANISM(S): Capsicum annuum 
2005-03-01 | E-MEXP-260 | biostudies-arrayexpress
ProteomicsHuman LMO2 binding protein LC-MSMS in U87MG(Glioblastoma cell)
To identify the binding partner of LMO2 for explanation of STAT3 signal-related protein in human glioblastoma
ORGANISM(S): Homo sapiens (Human) 
2022-08-11 | PXD028254 | Pride
Human Lmo2 Glioblastoma 
TranscriptomicsGene Expression Defines Natural Changes in Mammalian Lifespan
Mammals differ more than hundred fold in maximum lifespan, which can be altered in either direction during evolution, but the molecular basis for natural changes in longevity is not understood. Divergent evolution of mammals also led to extensive changes in gene expression within and between lineage...
ORGANISM(S): Bos taurus 
2015-02-17 | E-GEOD-43013 | biostudies-arrayexpress
GenomicsChIP_seq
Ctbp2 regulates exit from pluripotency via silencing of embryonic stem cell active genes during differentiation. We mapped the genome-wide occupancy of Ctbp2 by ChIP-seq in mESC (E14).
ORGANISM(S): Mus musculus 
2015-06-30 | E-MTAB-2002 | biostudies-arrayexpress
TranscriptomicsE14RNA-seq
Ctbp2 regulates exit from pluripotency via silencing of embryonic stem cell active genes during differentiation. Gene expression profiles were analyzed for wild-type and Ctbp2-knockdown ESCs at both fferentiated(+LIF) and undifferentiated(-LIF) state.
ORGANISM(S): Mus musculus 
2014-12-31 | E-MTAB-2030 | biostudies-arrayexpress
ProteomicsEvaluation of nondepleted plasma multiprotein-based model for discriminating psychiatric disorders using multiple reaction monitoring-mass spectrometry: Proof of concept study
Psychiatric evaluation relies on subjective symptoms and behavioral observation, which sometimes lead to misdiagnosis. Although there have been efforts to utilize plasma proteins as objective markers, the depletion method is time-consuming. Therefore, this study aimed to enhance previous quantificat...
ORGANISM(S): Homo Sapiens 
2026-04-10 | PXD046722 | panorama
TranscriptomicsAberrant Regulation of HDAC2 Mediates Proliferation of Hepatocellular Carcinoma Cells by Deregulating Expression of G1/S Cell Cycle Proteins
To investigate the specific roles of HDAC2 in the development of liver cancer, we employed large-scale gene expression analysis to identify the molecular signature that may affect enabling characteristics of cancer cells. Differentially expressed genes were analyzed on the Hep3B cells transfected wi...
ORGANISM(S): Homo sapiens 
2012-03-01 | E-GEOD-32070 | biostudies-arrayexpress
TranscriptomicsExpression of M-CSF from cryopreserved teeth-derived human periodontal ligament cells with different freezing protocols
This study investigated which genes regarding root resorption are upregulated by cryopreservation and whether cryopreservation affects the expression of Macrophage M-bM-^@M-^Scolony stimulating factor. We manufactured the customized template which was made of genes selected regarding root resorption...
ORGANISM(S): Homo sapiens 
2013-01-19 | E-GEOD-43611 | biostudies-arrayexpress
TranscriptomicsmiR-495 regulates multiple epigenetic modifiers in gastric cancer
Revealing Dominant Regulatory MicroRNA-495-3p that Governs Multiple Epigenetic Modifiers in Gastric Carcinogenesis In this study, we identified miR-495-3p targeting multiple epigenetic modifiers through comprehensive miRNA and mRNA profiling analysis with in silico target prediction in GC. Western b...
ORGANISM(S): Homo sapiens 
2015-09-18 | E-GEOD-67354 | biostudies-arrayexpress
TranscriptomicsPyknon siRNA transfection compared with empty vector
We designed siRNAs against pyk-reg-90 and pyk-reg-10 using the Dharmacon algorithm (Dharmacon siDESIGN http://www.dharmacon.com/sidesign/). Each of four highest-ranking siRNA sequences for pyk-reg-90 and pyk-reg-10 respectively was tested in our and pyk-reg-90, we used a pool of different siRNAs th...
ORGANISM(S): Homo sapiens 
2014-06-01 | E-MTAB-754 | biostudies-arrayexpress
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