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TranscriptomicsMethylome profiling of human glioblastoma using Illumina 450K microarrays for the GlioTeX panel
Genome-wide methylation profiles were generated as part of a multi-omics characterization (SNP array, WES, RNA-seq, cDNA microarray) of a panel of gliomasphere cell lines and matched parental tumors. See https://www.ncbi.nlm.nih.gov/pubmed/27571888 about the GlioTeX panel. Methylation profiling d...
ORGANISM(S): Homo sapiens 
2017-06-24 | E-MTAB-5797 | biostudies-arrayexpress
GenomicsGBM-ZEB1 Data Access Committee
Data Access Committee EGAC00001000354
EGAC00001000354 | EGA
TranscriptomicsMethylation profiling of adult astroblastoma
Aims and methods: astroblastoma is a rare glial brain tumor with singular morphology. Recurrent MN1-BEND2 fusions have been recently identified in most of pediatric cases. Adolescent and adult cases, however, remain molecularly poorly defined. Here, we performed clinical and molecular characterizati...
ORGANISM(S): Homo sapiens 
2019-03-22 | E-MTAB-7490 | biostudies-arrayexpress
GenomicsSame-day genomic and epigenomic diagnosis of brain tumors using realtime nanopore sequencing
Molecular classification of cancer has entered clinical routine to inform diagnosis, prognosis and treatment decisions. At the same time, new tumor entities have been identified that cannot be defined histologically. For central nervous systems tumors, the current World Health Organization classific...
EGAS00001002213 | EGA
Genomicsena-DATASET-CHARITE-14-11-2016-15:58:14:863-1222 - samples
This dataset contains all RNA-seq runs for the BLN panel of cell lines and matched parental tumors. Tumor/cell line pairs have been authenticated using SNP profiles and all pairs were confirmed. Please note: The dataset also contains raw data from an early primary culture (BLN-1) where no stable cel...
EGAD00001002893 | EGA
Genomicsena-DATASET-CHARITE-28-09-2015-14:05:54:879-543 - samples
This dataset contains RNA sequencing raw data from four parental tumors that were used for classification of gene expression subtypes (Verhaak, Cancer Cell 2010) using ssGSEA.
EGAD00001001627 | EGA
GenomicsThe Berlin (BLN) panel of glioblastoma cell lines: RNAseq of human gliomasphere cell lines and matched parental tumors
We generated a panel of nine glioma stem-like cell lines under serum-free cell culture conditions from human glioblastoma samples. In addition to clinical annotation, MR imaging and histological characterization of the parental tumor, as well as xenograft studies of tumorigenecity, transcriptomic pr...
EGAS00001001167 | EGA
Genomicsena-DATASET-ICM-15-06-2017-11:25:49:785-1367 - samples
Description not provided
EGAD00001003382 | EGA
Genomicsena-DATASET-ICM-15-06-2017-21:23:23:822-1522 - samples
Description not provided
EGAD00001003387 | EGA
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