Evolutionary proteomics

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Proteomics (828)
Unknown (745)
Genomics (34)
Transcriptomics (7)
Multiomics (6)
Metabolomics (5)
Other (3)

Organisms

Homo sapiens (12)
Tetrahymena thermophila (2)
Bos taurus (2)
Streptomyces coelicolor (1)
Acidithiobacillus caldus (1)
Gallus gallus (1)
Hericium erinaceus (1)
Mus musculus (1)
Skeletonema dohrnii (1)
Sternaspis chinensis (1)
Clanis bilineata (1)
Gymnocypris przewalskii przewalskii (1)
Helicoverpa armigera nucleopolyhedrovirus G4 (1)
Schizochytrium sp. TIO1101 (1)
Pachycrepoideus vindemmiae (1)
Saccharina japonica (1)
Hierodula patellifera (1)
Periplaneta americana (1)
Gryllinae (1)
Locusta migratoria (1)
Beauveria bassiana ARSEF 2860 (1)
Nasonia vitripennis (1)
Arachis hypogaea (1)
Methanococcus maripaludis X1 (1)
Sinonovacula constricta (1)
Trichinella spiralis (1)
Acanthochitona rubrolineata (1)
Pseudomonas aeruginosa PAO1H2O (1)
Locusta migratoria manilensis (1)
Haloferax volcanii (1)

Organisms

Homo sapiens (4)
Tetrahymena thermophila (2)
Microglena sp. YARC (1)
Acidithiobacillus caldus (1)
Monodon monoceros (1)
Hericium erinaceus (1)
Heliconius sara (1)
Caenorhabditis elegans (1)
Gallus gallus (1)
human gut metagenome (1)
Mus musculus (1)

Repository

pride (616)
PAXDB (93)
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iProX (37)
ENA (31)
jPOST (17)
geo (9)
PanoramaPublic (8)
MetaboLights (5)
GPMDB (3)
biostudies-arrayexpress (2)

Tissue

Cell culture (101)
Plant cell (26)
Whole body (24)
Epithelial cell (23)
Leaf (20)
Venom (19)
Permanent cell line cell (19)
Brain (16)
Fibroblast (13)
Cell suspension culture (11)
Skeleton (10)
Bone (10)
Blood (10)
Tooth enamel (9)
Diploid cell (9)
Liver (9)
Photosynthetic cell (8)
Heart (8)
Embryo (8)
Root (7)
Bone marrow (6)
Blood cell (6)
Skin (6)
Embryonic stem cell (6)
Sperm (6)
Venom gland (5)
Egg (5)
Blood serum (5)
Protonema (4)
Saliva (4)

Disease

Disease free (14)
Wounds and Injuries (11)
Giardiasis (5)
Colon cancer (5)
Malaria (4)
Malignant neoplasm of ovary (4)
Breast cancer (4)
Not Available (3)
Cardiovascular system disease (2)
Cervix carcinoma (2)
Brain cancer (2)
Neuroblastoma (2)
Type 2 diabetes mellitus (2)
Otitis media (1)
Tricuspid valve disease (1)
Primary amebic meningoencephalitis (1)
Ovarian dysfunction (1)
Hepatitis (1)
Breast adenocarcinoma (1)
Fabry disease (1)
Meningitis (1)
Gastroenteritis (1)
Cockayne syndrome (1)
Cerebrovascular disease (1)
Urinary tract infection (1)
Herpes simplex (1)
Trypanosomiasis (1)
Sleeping sickness (1)
Coronavirus infectious disease (1)
Polycystic Kidney (1)

Technology Type

Mass Spectrometry (616)
Shotgun proteomics (345)
Bottom-up proteomics (119)
Affinity purification coupled with mass spectrometry proteomics (85)
Data-dependent acquisition (59)
Gel-based experiment (58)
Data-independent acquisition (27)
Top-down proteomics (16)
Chemical cross-linking coupled with mass spectrometry proteomics (13)
SWATH MS (13)
HDMSE (9)
SRM/MRM (9)
Mass spectrometry (4)
MSE (4)
Proteogenomics (3)
DiaPASEF (3)
Glycoproteomics (2)
All-ion fragmentation (2)
Mass spectrometry assay (1)
Metaproteomics (1)
Mass spectrometry imaging (1)

Instrument Platform

Q Exactive (14)
Orbitrap Fusion Lumos (9)
LTQ Orbitrap Elite (5)
TripleTOF 5600 (4)
Orbitrap Eclipse (4)
Instrument (3)
LTQ (3)
LTQ Orbitrap Velos (3)
LTQ Orbitrap (3)
Orbitrap Exploris 480 (2)
Q Exactive Plus (2)
Orbitrap Fusion (2)
Liquid Chromatography MS - positive - reverse phase (2)
LTQ Orbitrap Velos Pro (Thermo Scientific) (1)
LTQ FT (1)
ImpactHD (Bruker Daltonics) (1)
Q-Exactive (Thermo Fisher) (1)
LTQ Orbitrap Pro (1)
MicrOTOF-Q II (1)
Q-Exactive (1)
Exactive Plus (1)
Impact II (1)
TimsTOF fleX (1)
Orbitrap Exploris 120 (1)
6530A Q-TOF LC/MS (1)
Impact (1)
LTQ Orbitrap XL (1)
MaXis (1)
Q Exactive HF-X (1)
Q Exactive HF (1)

Publication Date

2020 (159)
2026 (106)
2023 (93)
2024 (89)
2022 (83)
2025 (78)
2021 (69)
2018 (45)
2019 (42)
2016 (25)
2017 (20)
2015 (15)
2014 (10)
2013 (4)
2010 (1)
2012 (1)
2009 (1)

UNIPROT ID/AC

OTU9_ARATH (3)
AFC2_ARATH (3)
F4JIX9_ARATH (3)
Q8GYQ9_ARATH (3)
FLOT1_ARATH (3)
F4J3S6_ARATH (3)
MEX1_ARATH (3)
DPNP4_ARATH (3)
PHR1_ARATH (3)
AML3_ARATH (3)
Q0WNZ8_ARATH (3)
NRT31_ARATH (3)
Q9C7J8_ARATH (3)
B9UY99_ARATH (3)
RH17_ARATH (3)
B3H6R5_ARATH (3)
IQM4_ARATH (3)
Q8GW13_ARATH (3)
CTR1_ARATH (3)
Q8VZ65_ARATH (3)
Q9SCZ9_ARATH (3)
Q8RWJ5_ARATH (3)
F4KDD0_ARATH (3)
2AB2C_ARATH (3)
AATP5_ARATH (3)
R15A2_ARATH (3)
Q8GXY3_ARATH (3)
SMD3A_ARATH (3)
SMD1B_ARATH (3)
KIN17_ARATH (3)

CHEBI ID

CHEBI:17822 (3)
CHEBI:17148 (3)
CHEBI:18257 (3)
CHEBI:15741 (3)
CHEBI:6650 (3)
CHEBI:18012 (3)
CHEBI:30915 (3)
CHEBI:35932 (2)
CHEBI:18186 (2)
CHEBI:24848 (2)
CHEBI:17084 (2)
CHEBI:16811 (2)
CHEBI:24898 (2)
CHEBI:15356 (2)
CHEBI:27266 (2)
CHEBI:15611 (2)
CHEBI:48430 (2)
CHEBI:16530 (2)
CHEBI:26271 (2)
CHEBI:28044 (2)
CHEBI:16708 (2)
CHEBI:42111 (2)
CHEBI:15891 (2)
CHEBI:27897 (2)
CHEBI:15428 (2)
CHEBI:32816 (2)
CHEBI:25017 (2)
CHEBI:15978 (2)
CHEBI:28300 (2)
CHEBI:30769 (2)

Metabolite Name

Serine (3)
Pyruvic acid (2)
2-hydroxyglutaric acid (2)
Aspartic acid (2)
Tyrosine (2)
Sarcosine (2)
Phenylalanine (2)
Ornithine (2)
Methionine (2)
Valine (2)
Tryptophan (2)
Putrescine (2)
Proline (2)
Malic acid (2)
Isoleucine (2)
Leucine (2)
Glycine (2)
Glutamine (2)
Cysteine (2)
Fumaric acid (2)
Succinic acid (2)
Adenine (2)
Alpha-keto-beta-methylvalerate (1)
Beta alanine (1)
Alpha-ketoisocaproate (1)
N-octyl-beta-D-thioglucopyranoside (1)
1alpha,24-Dihydroxycholecalciferol (1)
(25S)-1alpha,25,26-Trihydroxyvitamin D3/(25S)-1alpha,25S,26-trihydroxycholecalciferol (1)
Oleoyl (1)
4'-Hydroxynomifensine (1)

First Public Date

2025 (7)
2026 (5)
2021 (5)
2023 (3)
2020 (3)
2022 (2)
2019 (2)
2018 (2)
2024 (1)
2016 (1)

Modification

3x(2)H labeled N6-acetyl-L-lysine (2)
15.994915 (2)
N6 (2)
Not available (2)
47.036105 (1)
-17.026549 (1)
42.010565 (1)
58.005479 (1)
N6-dimethyl-L-lysine (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)
+3amu) (1)

Study type

Transcription profiling by array (1)
Proteomic profiling by array (1)

Release Date

2021 (82)
2025 (68)
2022 (68)
2020 (56)
2023 (55)
2019 (46)
2016 (45)
2024 (42)
2017 (41)
2018 (35)
2014 (34)
2015 (25)
2012 (25)
2010 (23)
2011 (23)
2013 (22)
2009 (15)
2008 (12)
2026 (8)
2006 (7)
2007 (5)
2005 (5)
2004 (3)
2003 (2)

Lab affiliation

Professor of Genomic Evolution, School of Medicine, Conway Institute of Biomolecular and Biomedical Research, University College Dublin Belfield Dublin 4 (11)
Department of Ecology & Evolutionary Biology, University of California, Los Angeles, CA (8)
Assistant Professor, Evolutionary Venomics Lab, Center for Ecological Sciences, Indian Institute of Science, Bangalore, India (8)
Evolutionary and translational venomics Lab, Instituto de Biomedicina de Valencia, CSIC (7)
School of Agriculture, Meiji University (4)
Berlin Institute of Health at Charite, Universitaetsmedizin Berlin, Core Facility Proteomics; Max Delbrueck Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin, Germany (4)
Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium (4)
Institute of Molecular Biology (IMB) (4)
University of Zurich, Institute of Parasitology (4)
Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel (3)
Leibniz Institute on Aging - Fritz Lipmann Institute (FLI) Beutenbergstraße 11 07745 Jena, Germany (3)
University of Cincinnati College of Medicine (3)
Technical University of Munich, School of Medicine, Institute of Virology, 81675 Munich, Germany (3)
Head of the Curie Institute Mass Spectrometry Platform (3)
Research Group Leader, Friedrich Miescher Institute for Biomedical Research (2)
Medical bioanalytics Institute for ophthalmic research Eberhard-Karls-University Tuebingen (2)
School of Biological and Behavioural Sciences Queen Mary University of London (2)
Department of Pharmaceutical Biotechnology, Institute of Pharmacy, University of Greifswald, Germany (2)
Institute of Evolutionary Medicine, University of Zurich (2)
Systems Biology Initiative, School of Biotechnology and Biomolecular Sciences, University of New South Wales, New South Wales, 2052, Australia (2)
yangjinguang@caas.cn (2)
Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA (2)
Prof. Dr. M. Waheed Akhtar, School of Biological Sciences, University of the Punjab, Lahore, Pakistan (2)
Department of Physiology, Faculty of Pharmacy, University of Valencia, Burjassot, Valencia, Spain (2)
Functional and Evolutionary Entomology, Gembloux Agro-Bio Tech, University of Liège, Belgium (2)
Syracuse University (2)
Department of Ecology, Evolution and Behavior Alexander Silberman Institute of Life Sciences Faculty of Science The Hebrew University of Jerusalem (2)
Director at Max Planck Institute of Biochemistry Department Proteomics und Signaltransduktion Am Klopferspitz 18, 82152 Martinsried (2)
Institute for Infectious Diseases, University of Bern, Switzerland (2)
VIB-UGent Center for Plant Systems Biology (2)

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Evolutionary proteomics identifies amino acids essential for ligand-binding of the cytokinin receptor CHASE domain.

Not available

S-EPMC1863423 | biostudies-literature

Integrating metabolic and evolutionary engineering for enhanced propionic acid production under cross stress: a multi-omics perspective

We performed a combination of metabolic engineering (deletion of ldh and poxB and overexpression of mmc) with evolutionary engineering (selection under oxygen stress, acid stress and osmotic stress) in Propionibacterium acidipropionici. The results indicated that the mutants had superior physiologic...

ORGANISM(S): Acidipropionibacterium acidipropionici

2020-04-27 | PXD016616 | Pride

Quantitative evolutionary proteomics of seminal fluid from primates with different mating systems.

Not available

S-EPMC6014011 | biostudies-literature

Faecal proteomics as a novel method to study mammalian behaviour and physiology.

Not available

S-EPMC8360081 | biostudies-literature

Proteomics and comparative genomic investigations reveal heterogeneity in evolutionary rate of male reproductive proteins in mice (Mus domesticus).

Not available

S-EPMC2734151 | biostudies-literature

An evolutionary proteomics approach identifies substrates of the cAMP-dependent protein kinase.

Not available

S-EPMC1236527 | biostudies-literature

AssessORF: combining evolutionary conservation and proteomics to assess prokaryotic gene predictions.

Not available

S-EPMC7998711 | biostudies-literature

Comparative genomics studies on the intertidal spider (Desis jiaxiangi) provide new insights into evolutionary adaptations to a marine lifestyle

This project investigates the adaptive evolution of intertidal spider silk proteins, focusing on the proteomic and structural composition of silks. Using high-resolution mass spectrometry, this study provides insights into silk’s structural diversity and adaptive potential, elucidating evolutionary ...

ORGANISM(S): Desis jiaxiangi

2026-04-14 | PXD057357 | Pride

Evolutionary adaptations Spider silk Intertidal spider

Evolutionary Proteomics Reveals Distinct Patterns of Complexity and Divergence between Lepidopteran Sperm Morphs.

Not available

S-EPMC6607854 | biostudies-literature

Studying human and nonhuman primate evolutionary biology with powerful in vitro and in vivo functional genomics tools.

Not available

S-EPMC10574139 | biostudies-literature

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1622 Results

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Organisms

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