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ProteomicsProteomics Analysis of Evolved Escherichia coli Populations from Cyclic Antibiotic Treatment
When the survivors of antibiotic treatment (persisters) are repeatedly regrown and retreated with the same antibiotic for several cycles, the new population will soon adapt to the treatment condition and become tolerant to the drug. Here, we did evolution experiments on Escherichia coli populations ...
ORGANISM(S): Escherichia coli 
2020-01-10 | PXD013326 | Pride
Proteomics Persistence Antibiotic Persisters Evolved populations 
ProteomicsProteomics Study of Filamentous Persisters from Evo3A Evolved Populations during Ampicillin Treatment and Resuscitation
Proteomics is the most suitable tool to study persisters with their complex underlying molecular mechanisms from a system-level perspective, but the number of persisters that present naturally is too few for proteomics analysis. Here, we utilized Evo3A, an evolved population with enriched persisters...
ORGANISM(S): Escherichia coli 
2020-07-13 | PXD016271 | Pride
Antibiotic Resuscitation Β-lactam Proteomics Persisters Ampicillin Filaments 
TranscriptomicsDeterminants of divergent adaptation and Dobzhansky-Muller interaction in experimental yeast populations
Divergent adaptation can be associated with reproductive isolation in the process of speciation. We recently demonstrated the link between divergent adaptation and the onset of reproductive isolation in experimental populations of the yeast Saccharomyces cerevisiae evolved from a single progenitor ...
ORGANISM(S): Saccharomyces cerevisiae 
2010-07-15 | E-GEOD-20943 | biostudies-arrayexpress
TranscriptomicsExpression analysis of evolved polygamous and monogamous Drosophila melanogaster
Investigation of gene expression level changes in evolved polygamous and monogamous populations of Drosophila melanogaster. The populations investigated are described in Hollis et al. 2011. Populations with elevated mutation load do not benefit from the operation of sexual selection. Journal of Evol...
ORGANISM(S): Drosophila melanogaster 
2014-03-17 | E-GEOD-39742 | biostudies-arrayexpress
ProteomicsProteomic study of evolved P. aeruginosa strains grown in S. aureus- and K. pneumoniae-conditioned media
In this research, Pseudomonas aeruginosa underwent evolution in the supernatant of either S. aureus (SA) or K. pneumoniae (KP). Through this evolution process, we enriched a sufficient number of bacterial cells along with their corresponding proteins. Following 15 cultivation cycles, notable changes...
ORGANISM(S): Pseudomonas aeruginosa PAO1 
2025-05-21 | PXD059669 | Pride
Supernatant Laboratory evolution Proteomics K. pneumoniae S. aureus P. aeruginosa 
TranscriptomicsMolecular Specificity, Convergence and Constraint Shape Adaptive Evolution in Nutrient-Poor Environments [aCGH]
One of the central goals of evolutionary biology is to explain and predict the molecular basis of adaptive evolution. We studied the evolution of genetic networks in Saccharomyces cerevisiae (budding yeast) populations propagated for more than 200 generations in different nitrogen-limiting condition...
ORGANISM(S): Saccharomyces cerevisiae 
2013-11-28 | E-GEOD-52696 | biostudies-arrayexpress
TranscriptomicsC1 evolved adaptive clones M1-M5
Chemostat evolution experiment C1 under glucose-limited condition at 30C. Gene Expression profiles of adaptive clones M1-M5 in evolved conditions compared with original parents. An all pairs experiment design type is where all labeled extracts are compared to every other labeled extract. Genotype: ...
ORGANISM(S): Saccharomyces cerevisiae 
2008-08-20 | E-GEOD-11071 | biostudies-arrayexpress
TranscriptomicsTranscriptional profiling of Drosophila melanogaster heads from experimentally-evolved populations
We used RNA sequencing to examine the transcriptomes of male and female heads from experimentally-evolved D. melanogaster populations after 117 generations of mating system manipulation in order to examine the pattern of evolution in sex-biased genes. Examined head transcriptomes of 3 monogamous pop...
ORGANISM(S): Drosophila melanogaster 
2014-03-17 | E-GEOD-50915 | biostudies-arrayexpress
GenomicsDNA-seq of Halomonas sp. DSM7328 original strain and evolved population in low dissolved oxygen level
Whole genome sequencing was performed on Halomonas sp. DSM7328 both original strain and evolved population in low dissolved oxygen (DO) level at 0.5% DO. The evolved Halomonas sp. DSM7328 was analysed and compared to the original strain.
ORGANISM(S): Halomonas sp. 
2026-04-15 | E-MTAB-15059 | biostudies-arrayexpress
GenomicsWhole genome sequencing of experimentally evolved D. melanogaster populations with 4xBicoid
Whole genome sequencing of experimentally evolved D. melanogaster populations with 4xBicoid
PRJEB52936 | ENA
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