Excitatory neuron

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Organisms

Mus musculus (120)
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Repository

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Tissue

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Cell culture (10)
Neuron (6)
Hippocampus (3)
Cerebellum (2)
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Hippocampal neuron (2)
Excitatory neuron (1)
Excitatory synapse (1)
Neuron of the forebrain (1)
Neocortex (1)
Purkinje cell (1)
Neuron cellular homeostasis (1)
Hippocampal pyramidal neuron (1)
Neuron of cerebral cortex (1)
Prefrontal cortex (1)
CNS neuron (sensu Vertebrata) (1)
Pluripotent stem cell (1)
Glial cell (1)
Cortical interneuron (1)
Primary cell (1)
T cell (1)
Blood (1)

Disease

Alzheimer's disease (3)
Hepatic encephalopathy (2)
Parkinson's disease (2)
SMARD1 (1)
Neurodevelopmental delay (1)
Genetic disease (1)
Rett syndrome (1)
Developmental and epileptic encephalopathy 1 (1)
Neurodegenerative disease (1)
Epilepsy (1)
Autism spectrum disorder (1)

Technology Type

Mass Spectrometry (43)
Shotgun proteomics (18)
Bottom-up proteomics (10)
Affinity purification coupled with mass spectrometry proteomics (9)
Data-dependent acquisition (6)
SWATH MS (5)
Data-independent acquisition (4)
Mass spectrometry (2)
Gel-based experiment (2)
ILLUMINA, Illumina HiSeq 2500 (1)
Mass spectrometry assay (1)
Affinity proteomics (1)
DiaPASEF (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (5)
Illumina HiSeq 4000 (4)
NextSeq 550 (3)
Illumina NovaSeq 6000 (3)
Orbitrap Fusion Lumos (3)
Single-Cell Extraction: For enzymatic digestion, pronase (Septomyces argeus, 1 mg/mL) was applied for 25 minutes at room temperature for P0 to P8 datasets. Cells were dissociated and triturated into a single-cell suspension in ACSF supplemented with 1% fetal calf serum (FCS) and DNase (1 µL/10 mL). Trituration was performed using three glass Pasteur pipettes of decreasing diameters. For P30 datasets, enzymatic digestion and cell dissociation were carried out using the Worthington Papain Dissociation System, following the manufacturer’s instructions. Single-Nuclei Extraction: For nuclei isolation, the Hibernate™-E Medium was removed, and 500 µL of chilled 0.1X NP40 Lysis Buffer was added. Tissue was homogenized using a Pellet Pestle (15 strokes) and incubated on ice for 5 minutes. The suspension was pipette-mixed 10 times using a wide-bore pipette tip and incubated for an additional 10 minutes on ice. Following lysis, 500 µL of chilled wash buffer was added, and the mixture was pipette-mixed 5 times using a regular-bore pipette tip. The suspension was filtered through a 30 µm cell strainer into a 50 mL tube to remove debris. The filtered suspension was transferred to a 1.5 mL tube and centrifuged at 950 × g for 10 minutes at 4°C. The supernatant was carefully removed, and the nuclei pellet was retained for downstream analysis. (2)
LTQ Orbitrap Elite (2)
Orbitrap Eclipse (2)
-- (1)
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10X v3 (1)
Maxwell 16 (1)
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Illumina MiniSeq (1)
Ion Torrent Proton (1)
NextSeq 500 (1)
Orbitrap Fusion Tribrid (Thermo Scientific instrument model) (1)
LTQ Velos (1)
Orbitrap Fusion (1)
Q Exactive HF (1)
Q Exactive (1)
Q Exactive Plus (1)
LTQ Orbitrap (1)
Orbitrap Exploris 480 (1)
LTQ Orbitrap Discovery (Thermo Scientific) (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
LTQ Orbitrap Velos (1)

Publication Date

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2015 (10)
2014 (9)
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2008 (7)
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2012 (6)
2013 (3)
2009 (3)
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2011 (2)
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2007 (2)

UNIPROT ID/AC

Q9Z2E4 (1)
Q9Z223 (1)
Q9Z0M3 (1)
Q9WVC2-2 (1)
Q9R1E6 (1)
Q9JHG0 (1)
Q9DB75 (1)
Q9DB30 (1)
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Q924T3 (1)
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Q8VHE6 (1)
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Q8R3U1 (1)
Q8R2Z5 (1)
Q8R1B0 (1)
Q8K070 (1)
Q8CIP5 (1)
Q8CFP6 (1)
Q8CFJ9 (1)
Q8CEG5 (1)
Q8CDJ3 (1)
Q8BZN5 (1)
Q8BW86 (1)
Q8BW22 (1)

ENSEMBL ID

ENSMUSP00000141542 (1)
ENSMUSP00000141637 (1)
ENSMUSG00000027651 (1)
ENSMUSG00000021039 (1)
ENSMUSG00000094652 (1)
ENSMUSG00000094546 (1)
ENSMUSG00000076695 (1)
ENSMUSG00000072849 (1)
ENSMUSP00000141097 (1)
ENSMUSG00000098557 (1)

CHEBI ID

CHEBI:15996 (2)
CHEBI:17552 (2)
CHEBI:15422 (2)
CHEBI:16761 (2)
CHEBI:88350 (1)
CHEBI:18391 (1)
CHEBI:90138 (1)
CHEBI:32484 (1)
CHEBI:3246 (1)
CHEBI:16905 (1)
CHEBI:18021 (1)
CHEBI:67249 (1)
CHEBI:40521 (1)
CHEBI:90142 (1)
CHEBI:15781 (1)
CHEBI:76620 (1)
CHEBI:70959 (1)
CHEBI:70958 (1)
CHEBI:17383 (1)
CHEBI:73025 (1)
CHEBI:73017 (1)
CHEBI:28907 (1)
CHEBI:18009 (1)
CHEBI:16070 (1)
CHEBI:73039 (1)
CHEBI:15584 (1)
CHEBI:18319 (1)
CHEBI:88000 (1)
CHEBI:90168 (1)
CHEBI:77064 (1)

Metabolite Name

GTP (2)
Malate (2)
Glutamate (2)
UTP (2)
Phosphoenolpyruvate (2)
UMP (2)
GDP (2)
Succinate (2)
Citrate (2)
Uridine (2)
Trehalose 6-phosphoric acid (1)
3-phosphoglycerol (1)
Erythose-4-phosphoric acid (1)
Ribulose-1,5-bisphosphate (1)
ADPglucose (1)
Diphosphoglycerate (1)
C-di-AMP (1)
Keto(iso)leucine (1)
Ribulose 5-phosphate (1)
Glycerol-phosphate (1)
3-Hydroxybutyrate (1)
2-Hydroxybutyrate (1)
UDPglucose (1)
Phosphoethanolamine (1)
Ribose 5-phosphate (1)
UDP-N-acetyl-glucosamine (1)
Cis-Aconitate (1)
2,3-Diphosphoglyceric acid (1)
Glycerophosphoethanolamine (1)
Trans-Aconitate (1)

First Public Date

2025 (49)
2026 (45)
2024 (44)
2023 (27)
2020 (19)
2021 (18)
2022 (12)
2018 (6)
2019 (5)
2015 (4)
2017 (3)
2014 (2)
2016 (1)

Modelling Approach

Ordinary differential equation model (2)

Lab affiliation

Department of Zoology, Institute of Science, Banaras Hindu University, Varanasi-221005, India (2)
VIB Center for Brain & Disease Research, Herestraat 49, 3000 Leuven, Belgium. (2)
Molecular Physiology of the Synapse Laboratory Institut de Recerca Sant Pau (IR Sant Pau) C/Sant Quintí, 77-79 08041 Barcelona Spain (2)
Institute of Physiology II, University of Freiburg, Germany (2)
Max Planck Institute of Psychiatry, Munich, Germany Biomedical Center, Molecular Biology, Ludwig-Maximilians-Universitat, Munich, Germany (1)
Institut du Fer a Moulin, Inserm-Sorbonne Université UMR-S 1270, Paris, France (1)
95 Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III - Paul Sabatier (UT3), Toulouse, 31077, France (1)
Department for Neurology Section Translational Neuroimmunology Jena University Hospital Am Klinikum 1, D-07747 Jena, Germany (1)
Institute of Genetics & Developmental Biology, Chinese Academy of Sciences (1)
Yale School of Medicine, Department of Neurolgy, Yale University (1)
Lab of Systems Neuroscience, Institute for Neuroscience, Department of Health Science and Technology, Swiss Federal Institute of Technology ETH, 8057 Zurich, Switzerland (1)
Keck MS & Proteomics Resource MBB Department Yale University (1)
Departments of Chemistry & Biology Vanderbilt University Associate Professor (1)
Room 6313, Academic building, The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon (1)
Fondazione Human Technopole (1)
Department of Pathophysiology, Second Faculty of Medicine, Charles University in Prague (1)
Skotte Research Group Department for Drug Design and Pharmacology Molecular Neuroprotection Novo Nordisk Foundation Center for Protein Research Clinical Proteomics University of Copenhagen (1)
Department of Computational Biology Weill Institute for Cell and Molecular Biology Center for Innovative Proteomics Cornell University (1)
MPI of Biophysics and MPI for Brain Research (1)
UHN (1)
Yale University, New Haven, CT 06511 (1)
Tufts University (1)
Department of Biology, University of Napoli Federico II, Napoli, Italy (1)
CECAD Excellence Center, University of Cologne, Germany, D-50931 Center for Physiology and Pathophysiology, Faculty of Medicine and University Hospital Cologne, University of Cologne, Germany, D-50931 (1)
Department of Laboratory Medicine, Wiita Lab, University of California, San Francisco, USA (1)
Department of Anesthesiology and Perioperative Medicine, Xijing Hospital,the Fourth Military Medical University, Xi'an 710032, China (1)
The Rockefeller University (1)
Graduate school of Biomedical and Health Sciences, Hiroshima University (1)
Associate Professor, Department of Cell and Systems Biology Director, Human Biology Program University of Toronto, Canada (1)
ETH Zurich, D-HEST, Lab of Systems Neuroscience (1)

IsPrivate

False (2)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (33)
RNA-seq of coding RNA (13)
RNA-seq of coding RNA from single cells (6)
Animal - High-throughput sequencing (3)
ChIP-seq (3)
RNA-seq of non coding RNA (2)
Cell line - Single-cell sequencing (1)
CLIP-Seq (1)
MicroRNA profiling by high throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)

Release Date

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2004 (4)
1999 (2)
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Persistent cortical excitatory neuron dysregulation in adult Chd8 haploinsufficient mice

PRJNA1282974 | ENA

Excitatory Neuron-Derived Interleukin-34 Controls Cortical Developmental Microglia Function

PRJNA1230265 | ENA

Identification of activity-induced Npas4-regulated genes in cortical inhibitory and excitatory neurons (array)

To identify the activity-induced gene expression programs in inhibitory and excitatory neurons, we analyzed RNA extracted from cultured E14 mouse MGE- and CTX-derived neurons (DIV 10) after these cultures were membrane-depolarized for 0, 1 and 6 hrs with 55mM extracellular KCl. To identify the gene ...

ORGANISM(S): Mus musculus

2015-06-04 | E-GEOD-55588 | biostudies-arrayexpress

Persistent cortical excitatory neuron dysregulation in adult Chd8 haploinsufficient mice [snRNA-Seq]

PRJNA1285366 | ENA

Transcription Factor Network Specifying Inhibitory versus Excitatory Neurons in the Dorsal Spinal Cord [RNA-Seq]

The proper balance of excitatory and inhibitory neurons is crucial to normal processing of somatosensory information in the dorsal spinal cord. Two neural basic helix-loop-helix transcription factors, Ascl1 and Ptf1a, are essential for generating the correct number and sub-type of neurons in multipl...

ORGANISM(S): Mus musculus

2014-06-13 | E-GEOD-55831 | biostudies-arrayexpress

MYT1L deficiency impairs excitatory neuron trajectory during cortical development [E14]

PRJNA1091600 | ENA

MYT1L deficiency impairs excitatory neuron trajectory during cortical development [P21]

PRJNA1091601 | ENA

MYT1L deficiency impairs excitatory neuron trajectory during cortical development [P1]

PRJNA1144958 | ENA

Engrailed transcription factors direct embryonic medial excitatory cerebellar nuclei neuron identity and survival

PRJNA1035068 | ENA

Neuroinflammatory Stress Preferentially Impacts Synaptic MAPK Signaling and Mitochondria in Excitatory Neurons

In this study, we have applied cell type-specific in vivo biotinylation of proteins (CIBOP) to label Camk2a excitatory neuronal proteomes, and imposed differential centrifugation to prepare synaptosome-enriched fractions, followed by proteomic analysis of biotinylated neuronal proteins. This approac...

ORGANISM(S): Mus musculus (Mouse)

2026-04-13 | PXD068874 | Pride

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