Extrusion - OmicsDI

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Lab affiliation

Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany; Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK. (4)
Reproductive Medicine Center, Department of Obstetrics and Gynecology, The First Affiliated Hospital of Anhui Medical University, No.218 Jixi Road, Hefei 230022, China (2)
Metastases Research Laboratory, GIGA-CANCER, University of LIEGE, BELGIUM (2)
Institut du Fer a Moulin, Inserm-Sorbonne Université UMR-S 1270, Paris, France (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht, The Netherlands Netherlands Proteomics Centre, Utrecht, The Netherlands. (1)
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School of Biomedical Sciences, Faculty of Medicine and Health, UNSW Sydney, Sydney, NSW, 2052, Australia (1)
College of Animal Science, Shanxi Agricultural University (1)
University of Oxford, Department of Physiology, Anatomy and Genetics (1)
Department of Life Sciences, Korea University, Seoul 02841, Republic of Korea (1)
Universuty of Gdansk, Intercollegiate Faculty of Biotechnology, Laboratory of Mass Spectrometry (1)
1- CIISA - Centre for Interdisciplinary Research in Animal Health, Faculdade de Medicina Veterinária, Universidade de Lisboa, 1300-477 Lisboa, Portugal 2- AL4AnimalS - Associate Laboratory for Animal and Veterinary Sciences, Faculdade de Medicina Veterinária, Universidade de Lisboa, 1300-477 Lisboa, Portugal (1)
i3S - Instituto de Investigação e Inovação em Saúde, Universidade do Porto Ipatimup - Institute of Molecular Pathology and Immunology of the University of Porto Rua Alfredo Allen, 208 4200-135 Porto Portugal (1)
University of Groningen. GRIP. (1)
La Trobe Institute for Molecular Science, Department of Biochemistry & Chemistry, La Trobe University, Melbourne, VIC, 3073, Australia. (1)
Department of Ophthalmology University Medical Center Mainz Germany (1)
Department of Chemical Engineering and Analytical Chemistry, Institute for Research on Nutrition and Food Safety (INSA·UB), University of Barcelona, 08028 Barcelona, Spain (1)
Université Clermont Auvergne, CNRS, Laboratoire Microorganismes : Génome et Environnement, F-63000 Clermont-Ferrand, France (1)
Tufts University School of Medicine (1)
Laboratoire MSAP UAR 3290 CNRS Bâtiment C4 Avenue Paul Langevin Cité Scientifique 59655 Villeneuve D'ascq 03 20 33 71 12 (1)
Biotech Research and Innovation Centre (BRIC), University of Copenhagen, Copenhagen, Denmark (1)
UC Berkeley (1)
Centre Hospitalier Universitaire Vaudois, Service de Médecine Interne, BH 10-667, Rue du Bugnon 46, CH-1011 Lausanne (1)
CEITEC-MU, Masaryk University, Kamenice 5, 625 00, Brno, Czech Republic (1)
U1205 Inserm (1)
Mass Spectrometry and Proteomics Facility, The Netherlands Cancer Institute, Amsterdam, The Netherlands (1)
Research Institute of Molecular Pathology (IMP), Austria (1)

Tags

pathogen (4)
pathogen:protozoan (2)
pathogen:bacterium (2)

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Cohesin supercoils DNA during loop extrusion

PRJNA1240266 | ENA

Conoid extrusion serves as gatekeeper for entry of glideosome components into the pellicular space to control motility and invasion in Apicomplexa

Members of the apicomplexans are defined by apical cytoskeletal structures and secretory or-ganelles, tailored for motility and invasion. Gliding is powered by the actomyosin-dependent rearward translocation of apically secreted transmembrane adhesins. In Toxoplasma gondii, the conoid, composed of a...

ORGANISM(S): Toxoplasma gondii GT1

2023-08-31 | PXD031816 | Pride

Expression analysis of a preinvasive pancreatic cancer mouse model with and without p120 catenin

Pancreatic cancer is one of the most deadly cancers with a 5 year survival rate of about 5%. Therapeutic options are limited, especially for patients that present with late state disease and metastasis. Although the metastatic burden of pancreatic cancer is usually high, little is known about the ...

ORGANISM(S): Mus musculus

2016-07-25 | E-GEOD-68090 | biostudies-arrayexpress

CTCF couples long-range loop extrusion and diffusional mechanism to mediate a diverse Igk repertoire

Dynamic genome folding plays a crucial role in cellular functions, including V(D)J recombination at the immunoglobulin kappa (Igκ) locus for antibody generation. This process involves frequent recombination between Jκ and Vκ gene segments over a 3.2 Mb region in both deletional and inversional orien...

ORGANISM(S): Mus musculus (Mouse)

2025-11-20 | PXD058006 | Pride

Bottom-up proteomics Lc-ms/ms

The energetics and physiological impact of cohesin extrusion

PRJNA384026 | ENA

RNA polymerases as moving barriers to condensin loop extrusion

PRJNA483447 | ENA

Basal cell extrusion primes pluripotent cells for differentiation

PRJNA880552 | ENA

Heterochromatin diversity modulates genome compartmentalization and loop extrusion barriers [HiC]

PRJNA754527 | ENA

Characterization of induced cohesin loop extrusion trajectories in living cells [Hi-C]