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TranscriptomicsPAR-CLIP of RBM4 and HIF-2a
To identify which mRNAs bind to RBM4/HIF-2a Two PAR-CLIPs were performed: One of an RBM4 immunoprecipitation, and the other of a HIF-2a immunoprecipitation and excising the associated RBM4 band.
ORGANISM(S): Homo sapiens 
2012-05-06 | E-GEOD-36247 | biostudies-arrayexpress
UnknownStepwise asynchronous telehealth assessment of patients with suspected axial spondyloarthritis: results from a pilot study.
Not available
S-EPMC10766678 | biostudies-literature
Proteomics,MultiomicsBrandmann_LSM14
This set of submissions contains the mass spectrometry files for the manuscript by Tobias Brandmann et al. that describes structure function study of LSM14. Affinity-purification experiments were performed using HeLa cells expressing LSM14A wild-type and mutant constructs, and MS files were acquired...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-12-19 | MSV000081830 | MassIVE
GenomicsEngineering of a promoterless anti-viral RNAi hairpin into an endogenous miRNA locus
Short hairpin RNA (shRNA) expression strategies that allow safe and persistent target mRNA knockdown are key to the success of many in vitro or in vivo RNAi applications. Here, we propose a novel solution which is expression of a promoterless miRNA-adapted shRNA (shmiRNA) from an engineered genomic ...
EGAS00001001252 | EGA
TranscriptomicsRNA processing in Bacillus subtilis: Identification of targets of the essential RNase Y
RNA processing and degradation is initiated by endonucleolytic cleavage of the target RNAs. In many bacteria, this activity is performed by RNase E which is not present in Bacillus subtilis and other Gram-positive bacteria. Recently, the essential endoribonuclease RNase Y has been discovered in B. s...
ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168 
2011-08-31 | E-GEOD-30430 | biostudies-arrayexpress
Genomicsena-DATASET-DKFZ-IBIOS-01-06-2015-13:43:18:542-193 - samples
Whole Genome Sequencing of Huh7 cell lines
EGAD00001001386 | EGA
GenomicsBioinformatics of Data Analysis (B240)
Data Access Committee EGAC00001000346
EGAC00001000346 | EGA
ProteomicsYoun_et_al_RNAbodies_SAINT3112_MSPLIT_DDA (PAIRED with MSV000081426)
This set of submissions contains the mass spectrometry files acquired using Data-Dependent Acquisition mode (DDA), which were paired with Data-Independent Acquisition mode (DIA) files (MSV000081426) for the manuscript by Ji-Young Youn et al. that describes the high-density proximity mapping of RNA b...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2018-01-17 | MSV000081945 | MassIVE
ProteomicsYoun_et_al_RNAbodies_SAINT3105_Set2
This set of submissions contains the mass spectrometry files for the manuscript by Ji-Young Youn et al. that describes the high-density proximity mapping of RNA bodies. BioID experiments were performed from Flp-In T-REx HEK293 cells and MS files were acquired on Orbitrap Elite and Orbitrap Velos. T...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-08-04 | MSV000081412 | MassIVE
ProteomicsYoun_et_al_RNAbodies_SAINT3108_MSPLIT_DDA (PAIRED with MSV000081419)
This set of submissions contains the mass spectrometry files acquired using Data-Dependent Acquisition mode (DDA), which were paired with Data-Independent Acquisition mode (DIA) files (MSV000081419) for the manuscript by Ji-Young Youn et al. that describes the high-density proximity mapping of RNA b...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2018-01-17 | MSV000081948 | MassIVE
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