Fan M M - OmicsDI

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Unknown (11722)
Proteomics (480)
Transcriptomics (321)
Metabolomics (187)
Genomics (77)
Multiomics (9)
Models (2)
Other (1)

Organisms

Homo sapiens (393)
Mus musculus (214)
Rattus norvegicus (24)
Arabidopsis thaliana (23)
Drosophila melanogaster (13)
Bacillus amyloliquefaciens (6)
Zea mays (6)
Danio rerio (5)
Saccharomyces cerevisiae (4)
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Helicobacter pylori 26695 (2)
Mus musculus x Mus spretus (2)
Macaca mulatta (2)
Vitis vinifera (2)
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Monopterus albus (1)
Gorgonia ventalina (1)
Rhodococcus opacus (1)
Papilio xuthus (1)
Tomato yellow leaf curl China virus (1)
Saccharomyces pastorianus Weihenstephan 34/70 (1)
Populus nigra (1)
uncultured bacterium (1)
Gossypium hirsutum (1)
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Malus domestica (1)

Organisms

Mus musculus (5)
Homo sapiens (3)
Agrobacterium fabrum str. C58 (1)
Solanum lycopersicum (1)

Repository

biostudies-arrayexpress (367)
pride (325)
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geo (2)
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Tissue

Cell culture (83)
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Blood (8)
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Disease

Disease free (12)
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Acute leukemia (6)
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LPS-induced acute lung injury (1)
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Normal (1)
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Avian influenza (1)
Bladder transitional cell carcinoma (1)
Bone cancer (1)
Brain cancer (1)
Cell type cancer (1)
Chronic myeloid leukemia (1)
Colon adenocarcinoma (1)
Colonic disease (1)
Endometrial Endometrioid Adenocarcinoma (1)

Technology Type

Mass Spectrometry (325)
Shotgun proteomics (175)
Mass spectrometry (99)
Bottom-up proteomics (54)
Data-dependent acquisition (34)
Chemical cross-linking coupled with mass spectrometry proteomics (31)
Affinity purification coupled with mass spectrometry proteomics (28)
NMR spectroscopy (21)
Gel-based experiment (20)
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SWATH MS (8)
SRM/MRM (5)
Mass spectrometry imaging (4)
HDMSE (2)
Immunopeptidomics (2)
MSE (2)
Proteogenomics (2)
Illumina OmniQuad 2.5 - CNVpartition (1)
All-ion fragmentation (1)
DiaPASEF (1)

Instrument Platform

LTQ Orbitrap Velos (61)
GC-MS (21)
GC MS (12)
Q Exactive (6)
LTQ Orbitrap (6)
Illumina HiSeq 2500 (4)
Illumina NovaSeq 6000 (4)
NextSeq 500 (4)
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MS:1000031 (3)
MA900, Sony (2)
10x Chromium Controller (2)
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Illumina MiSeq (2)
Agilent 7890A GC with 5975C inert XL MSD (2)
Bruker maXis ESI Quadrupole TOF (2)
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Model-G2505B US23502366 (1)
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GenePix 4000B [Axon Instruments] (1)
Affymetrix Fluidics Station 400 (1)
Illumina NovaSeq X (1)
NextSeq 2000 (1)
Illumina NextSeq 500 (1)
Illumina HiSeq 2000 (1)
6110 Quadrupole LC/MS (1)
6530A Q-TOF LC/MS (1)
Agilent GC-MS (1)
GC/MS Agilent MSD5977B (1)
LTQ Orbitrap Velos Pro (1)

Publication Date

2016 (87)
2023 (79)
2022 (78)
2015 (78)
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2021 (74)
2024 (74)
2026 (68)
2014 (65)
2012 (50)
2013 (49)
2019 (41)
2020 (39)
2017 (36)
2011 (36)
2018 (30)
2010 (28)
2009 (14)
2008 (14)
2007 (13)
2005 (4)
2006 (3)

UNIPROT ID/AC

A0A024RC46 (14)
A5A3E0 (14)
A6NNZ2 (14)
B3KML9 (14)
B4DHB3 (14)
B4DL86 (14)
B4DRV9 (14)
B4DY08 (14)
B4E3A4 (14)
C9JM50 (14)
E7EX29 (14)
G8JLB6 (14)
H0YM50 (14)
H7BZ94 (14)
I3L4N8 (14)
J3KPS3 (14)
J3QRK5 (14)
M0QZ52 (14)
O00299 (14)
O14556 (14)
O14818 (14)
O60812 (14)
O75369 (14)
O75369-8 (14)
O75694 (14)
O76013 (14)
O76015 (14)
O95678 (14)
P00338 (14)
P00338-3 (14)

ENSEMBL ID

ENSG00000170477 (14)
ENSG00000147251 (7)
ENSG00000247315 (3)

CHEBI ID

CHEBI:30769 (43)
CHEBI:15354 (41)
CHEBI:15741 (41)
CHEBI:15891 (39)
CHEBI:15428 (37)
CHEBI:16335 (35)
CHEBI:16919 (35)
CHEBI:16704 (34)
CHEBI:17596 (33)
CHEBI:28044 (33)
CHEBI:16737 (32)
CHEBI:17750 (32)
CHEBI:7916 (32)
CHEBI:6650 (31)
CHEBI:27897 (30)
CHEBI:17268 (29)
CHEBI:17295 (29)
CHEBI:17368 (29)
CHEBI:26271 (29)
CHEBI:27266 (28)
CHEBI:17191 (27)
CHEBI:17568 (27)
CHEBI:18186 (27)
CHEBI:25017 (27)
CHEBI:32816 (27)
CHEBI:15756 (26)
CHEBI:15971 (26)
CHEBI:16414 (26)
CHEBI:16449 (26)
CHEBI:16856 (26)

Metabolite Name

Choline (27)
L-Glutamine (24)
L-Histidine (24)
L-Phenylalanine (24)
Taurine (22)
Creatine (21)
Creatinine (21)
L-Isoleucine (20)
Hypoxanthine (19)
L-Arginine (19)
L-Leucine (19)
L-Valine (18)
Uridine (18)
Betaine (17)
D-Glucose (17)
L-Alanine (17)
L-Proline (17)
L-Threonine (17)
Citric acid (16)
Glycine (16)
Inosine (16)
L-Carnitine (16)
L-Lysine (16)
L-Methionine (16)
L-Tyrosine (16)
Xanthine (16)
Acetic acid (15)
Adenosine (15)
Cytosine (14)
L-Asparagine (14)

First Public Date

2025 (2)
2026 (1)
2024 (1)
2023 (1)
2021 (1)
2020 (1)
2017 (1)
2015 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (2)

Lab affiliation

Centre for Cancer Cell & Molecular Biology, Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK. (5)
College of Chemistry and Molecular Engineering, Peking University, Beijing, China. (4)
University of Alabama at Birmingham, O'Neal Mass Spectrometry Proteomics Shared Facility (4)
Beijing proteome research center (3)
Department of Structural Biology, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP) (3)
Leibniz-Forschungsinstitut für Molekulare Pharmakologie (3)
School of Food and Biological Engineering, Hefei University of Technology, Hefei, 230009, China (3)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute of Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands (2)
Carnegie MS facility (2)
Case Western Reserve University School of Medicine (2)
Centre for Cancer Cell & Molecular Biology Barts Cancer Institute Queen Mary University of London Charterhouse Square London EC1M 6BQ U.K. (2)
Clinical Laboratory of BGI Health, BGI-Shenzhen, Shenzhen 518083, China (2)
College of Animal Sciences and Technology, Huazhong Agricultural University, China (2)
College of Pharmacy, Jinan University, Guangzhou, China (2)
College of Plant Protection, Northwest A&F University (2)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (2)
Department of Developmental Neurobiology St. Jude Children's Research Hospital (2)
Department of Emergency Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (2)
Department of Physiology & Biophysics, University of California, Irvine, Irvine, California, USA (2)
Division of Internal Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (2)
Huazhong Agricultural University (2)
Huazhong University of Science and Technology (2)
Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, L69 3BX, United Kingdom (2)
Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101, China. (2)
Key Laboratory for Experimental Teratology of the Ministry of Education, Advanced Medical Research Institute, Qilu Hospital, Cheeloo College of Medicine, Shandong University (2)
Key Laboratory of Zoonosis of Liaoning Province, College of Animal Science & Veterinary Medicine, Shenyang Agricultural University, Shenyang, P.R. China (2)
Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP) (2)
Leibniz-Institute for Molecular Pharmacology (2)
Peking University (2)
School of Pharmacy, University of Wisconsin-Madison (2)

IsPrivate

False (2)

Study type

Transcription profiling by array (190)
RNA-seq of coding RNA (57)
ChIP-seq (37)
Other (10)
ChIP-chip by tiling array (9)
Comparative genomic hybridization by array (9)
Methylation profiling by array (9)
Methylation profiling by high throughput sequencing (9)
RNA-seq of non coding RNA (9)
Unknown experiment type (6)
Transcription profiling by RT-PCR (5)
Genotyping by array (3)
Animal - High-throughput sequencing (2)
Transcription profiling by tiling array (2)
Hi-C (2)
RNA-seq of coding RNA from single cells (2)
Human - High-throughput sequencing (1)
ChIP-chip by array (1)
RIP-seq (1)
RNA-seq of total RNA (1)

Release Date

2025 (1756)
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2020 (951)
2019 (614)
2018 (578)
2017 (475)
2016 (423)
2015 (351)
2014 (328)
2026 (275)
2013 (213)
2012 (179)
2011 (108)
2010 (93)
2009 (73)
2008 (52)
2007 (38)
2006 (17)
2005 (9)
2003 (9)
2004 (7)
2000 (5)
1999 (4)
2002 (3)
2001 (1)
1997 (1)

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High salt primes a specific activation state of macrophages, M(Na)

Purpose: Investigate effects of high salt on human macrophage activation Methods: Human monocytes-derived macrophages were treated by additional 51mM NaCl for 24 hours (NaCl groups) or not (Control groups). mRNA profiles were generated by RNA-Seq, in triplicate, using Ion proton（Life tech). qRT–PCR ...

ORGANISM(S): Homo sapiens

2015-09-23 | E-GEOD-68482 | biostudies-arrayexpress

Circular RNA circBNC2 regulates epithelial cell G2-M arrest to prevent fibrotic maladaptive repair

Epithelial cells arrested in G2/M phase of the cell cycle after injury is a key checkpoint for determining the wound-healing to either normal cell proliferation or fibrosis. The mechanism that regulates the fibrogenic response after injury is not well understood. Here, we identified a kidney- and li...

ORGANISM(S): Homo Sapiens

2022-04-18 | PXD033284 |

Immune response of the Caribbean sea fan, Gorgonia ventalina exposed to an Aplanochytrium parasite as revealed by transcriptome sequencing

Background. Coral reef communities are undergoing marked declines due to a variety of stressors including climate change, eutrophication, sedimentation, and disease. The sea fan coral, Gorgonia ventalina, is a tractable study system to investigate the hypothesis that stressors compromise immunity ...

ORGANISM(S): Gorgonia ventalina

2012-08-17 | E-GEOD-40169 | biostudies-arrayexpress

Untargeted metabolomics profiling reveals exercise intensity-dependent alterations in Thoroughbred racehorses’ plasma after routine conditioning sessions

Thoroughbred (TB) racehorses are subjected to rigorous conditioning programs involving exercise sessions of various types, distances and intensities. These programs aim to optimize both their physical and mental capabilities, which are essential to achieve maximal performance. Conventional invest...

2024-01-16 | MTBLS8285 | MetaboLights

Metabolome analysis reveal key regulatory pathways of feed conversion efficiency of oriental river prawn Macrobrachium nipponense

A total of 445 and 247 differently expressed metabolites (DEMs) were identified in the hepatopancreas and muscle. In addition, 11 KEGG pathways, which mainly include lysine biosynthesis, lysine degradation, aminoacyl-tRNA biosynthesis and purine metabolism, were sign...

2023-02-28 | MTBLS6663 | MetaboLights

Aerodynamic noise characteristics of a centrifugal fan in high-altitude environments.

Not available

S-EPMC10795985 | biostudies-literature

Extensive hybridization and introgression between Melastoma candidum and M. sanguineum.

Not available

S-EPMC4010499 | biostudies-literature

Stringent DDI-based prediction of H. sapiens-M. tuberculosis H37Rv protein-protein interactions.

Not available

S-EPMC4029759 | biostudies-literature

A Novel bla _CTX-M-65-Harboring IncHI2 Plasmid pE648CTX-M-65 Isolated from a Clinical Extensively-Drug-Resistant Escherichia coli ST648.

Not available