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ProteomicsProbing endogenous peptide acceptor substrate specificities of TbSTT3A and TbSTT3B
We performed glycoproteomics on endogenous parasite glycoproteins using sequential endoglycosidase-H and peptide-N-glycosidase-F digestions, the latter in the presence of H2[18O]. This allowed us to assess the relative occupancies of native N-glycosylation sites by endoglycosidase-H resistant N-glyc...
ORGANISM(S): Trypanosoma brucei 
2017-09-20 | PXD007267 | Pride
Trypanosoma Glycoproteomics Oligosaccharyltransferase N-linked glycosylation Stt3 Glycoprotein biosynthesis Parasitology 
ProteomicsNovel analysis on substrate specificities of TbSTT3A and TbSTT3B by glycoproteomics
reprocessed data from Izquierdo et al, Distinct donor and acceptor specificities of Trypanosoma brucei oligosaccharyltransferases
ORGANISM(S): Trypanosoma brucei 
2017-09-20 | PXD007268 | Pride
Trypanosoma Glycoproteomics Oligosaccharyltransferase N-linked glycosylation Stt3 Glycoprotein biosynthesis Parasitology 
Genomicsba3dbe29-0fd7-4ee5-99b8-d69d3c381e6e - samples
The BAM files for WES and RNA seq used in the article "Molecular Profiling Reveals Unique Immune and Metabolic Features of Melanoma Brain Metastases." on cancer Discovery 2019. PMID: 30787016 PMCID: PMC6497554. Authors : Grant M Fischer, ..., Michael A Davies.
EGAD00001005046 | EGA
ProteomicsTbSTT3A and TbSTT3B hetero-oligomeric complex
Directly address the oligomeric states of T. brucei STT3 subunits
ORGANISM(S): Trypanosoma brucei 
2017-09-20 | PXD007236 | Pride
Trypanosoma Glycoproteomics Oligosaccharyltransferase N-linked glycosylation Stt3 Glycoprotein biosynthesis Parasitology 
ProteomicsProteome Turnover in Bloodstream and Procyclic form Trypanosoma brucei Measured by Quantitative Proteomics
Cellular proteins vary significantly in both abundance and turnover rates. These parameters depend upon their rates of synthesis and degradation and it is useful to have look-up data on protein turnover rates when, for example, designing genetic knock-down experiments or assessing the potential usef...
ORGANISM(S): Trypanosoma brucei 
2019-09-17 | PXD007115 | Pride
Bloodstream Procyclic Turnover Proteomics Trypanosoma 
ProteomicsSelective modulation of cell surface proteins during vaccinia infection: a resource for identifying viral immune evasion strategies
The interaction between immune cells and virus-infected targets involves multiple plasma membrane (PM) proteins. A systematic study of PM protein modulation by vaccinia virus (VACV), the paradigm of host regulation, has the potential to reveal not only novel viral immune evasion mechanisms, but also...
ORGANISM(S): Homo sapiens (Human) Vaccinia virus WR Vaccinia virus 
2022-06-01 | PXD033407 | Pride
Vaccinia virus  plasma membrane  immune evasion  host-pathogen interaction 
ProteomicsA high-confidence glycosome proteome for procyclic form Trypanosoma brucei by epitope-tag organelle enrichment and SILAC
Epitope tagging and magnetic bead enrichment were combined with SILAC quantitative proteomics to determine a high-confidence glycosome proteome for the procyclic life cycle stage of the parasite Trypanosoma brucei.
ORGANISM(S): Trypanosoma brucei 
2014-05-13 | PXD000663 | Pride
Trypanosoma brucei Orbitrap velos Ap-ms 
UnknownGlucose availability controls ATF4-mediated MITF suppression to drive melanoma cell growth.
Not available
S-EPMC5464841 | biostudies-literature
UnknownPatient-Reported Toxicity During Pelvic Intensity-Modulated Radiation Therapy: NRG Oncology-RTOG 1203.
Not available
S-EPMC6097832 | biostudies-literature
UnknownSequential Dysfunction and Progressive Depletion of Candida albicans-Specific CD4 T Cell Response in HIV-1 Infection.
Not available
S-EPMC4900544 | biostudies-literature
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