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TranscriptomicsGene expression profile of Lactobacillus casei Zhang in fermented milk during transit in simulated gastrointestinal tract
The survival of probiotics could be strongly enhanced by delivery vehicles, but the mechanism was unknown. In this study, whole genome microarray technology was used to detect the gene expression profiles of probiotic Lactobacillus casei Zhang in the absence and presence of fermented milk in simulat...
ORGANISM(S): Lactobacillus casei str. Zhang 
2011-12-31 | E-GEOD-23685 | biostudies-arrayexpress
GenomicsLactobacillus delbrueckii strain:fermented milk | isolate:fermented milk
Lactobacillus delbrueckii strain:fermented milk | isolate:fermented milk Genome sequencing
PRJNA808174 | ENA
TranscriptomicsThe impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. (COPRO-Seq)
Understanding how the human gut microbiota and host are impacted by probiotic bacterial strains requires carefully controlled studies in humans, and in mouse models of the gut ecosystem where potentially confounding variables that are difficult to control in humans can be constrained. Therefore, we ...
ORGANISM(S): Bacteria 
2011-11-01 | E-GEOD-31943 | biostudies-arrayexpress
TranscriptomicsThe impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. (RNA-Seq)
Understanding how the human gut microbiota and host are impacted by probiotic bacterial strains requires carefully controlled studies in humans, and in mouse models of the gut ecosystem where potentially confounding variables that are difficult to control in humans can be constrained. Therefore, we ...
ORGANISM(S): Lactococcus lactis subsp. cremoris CNCM I-1631 
2011-11-01 | E-GEOD-31670 | biostudies-arrayexpress
ProteomicsPeptide profiling of sheep milk kefir through peptidomic analysis at different fermentation times
In this study, we applied a proteomics strategy to identify peptides present in sheep milk kefir fermented at different times. We aimed to understand changes in the digestion pattern of milk proteins as well as to identify potential bioactive peptides.
ORGANISM(S): Ovis aries 
2023-08-20 | PXD044067 | Pride
Proteomics Biopeptides Fermented milk Sheep Peptidome Dairy 
GenomicsLeuconostoc pseudomesenteroides strain:naturally fermented yak milk | isolate:naturally fermented yak milk
Leuconostoc pseudomesenteroides strain:naturally fermented yak milk | isolate:naturally fermented yak milk Genome sequencing
PRJNA1285680 | ENA
ProteomicsConsumption of traditional Sardinian fermented milk promotes changes in the rat gut microbiota composition and functions
Introduction: Fermented milk products are part of the staple diet for many Mediterranean populations. Most of these traditional foods are enriched with lactobacilli and other lactic acid bacteria and metabolites resulting from lactose fermentation. There is currently very little scientific knowledge...
ORGANISM(S): rat gut metagenome Rattus norvegicus (Rat) 
2025-09-29 | PXD054645 | Pride
Prevotella Metagenomics Propanoate metabolism Fermented milk Metaproteomics 
ProteomicsBovine milk fermented with single and mixed cultures of S. thermophilus and Lb. bulgaricus measured on microLC-timsTOF Pro
This study analyzed the impact of proteolysis by Streptococcus thermophilus (ST), Lactobacillus delbrueckii subsp. bulgaricus (LB), and endogenous milk enzymes on peptide formation during lactic acid fermentation. For this, peptide profiles of bovine milk fermented with single or mixed culture of ST...
ORGANISM(S): Bos taurus (Bovine) 
2026-07-07 | PXD065496 | Pride
Peptide profiling Microlc-im-qtof-ms/ms Bovine milk Lc-ms/ms 
GenomicsStreptococcus thermophilus strain:CS5 | isolate:Chinese fermented milk
Streptococcus thermophilus strain:CS5 | isolate:Chinese fermented milk Genome sequencing
PRJNA428571 | ENA
ProteomicsDonkey milk fermentation by Lactococcus lactis subsp. cremoris and Lactobacillus rhamnosus affects the antiviral and antibacterial milk properties
Background: milk is considered an important source of bioactive peptides, which can be produced by endogenous or starter bacteria, such as lactic acid bacteria, that are considered effective and safe producers of food-grade bioactive peptides. Among the various types of milk, donkey milk has been ga...
ORGANISM(S): Lactococcus lactis subsp. cremoris UC509.9 Lactobacillus rhamnosus GG Equus asinus (Donkey) 
2021-09-07 | PXD027765 | Pride
Bioactive peptides Donkey milk Lactococcus lactis subsp. cremoris 40fel3 Lactobacillus rhamnosus 17d10 Lc-ms/ms 
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