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MetabolomicsLegume rhizodeposition promotes nitrogen fixation by soil microbiota under crop diversification

Biological nitrogen fixation by free-living bacteria and rhizobial symbiosis with legumes plays a key role in sustainable crop production. Here, we study how different crop combinations influence the interaction between peanut plants and their rhizosphere microbiota via metabolite deposition and ...

2024-03-19 | MTBLS6537 | MetaboLights
ProteomicsCellulose and hemicellulose decomposition by forest soil bacteria proceeds by the action of structurally variable enzymatic systems
Evidence shows that bacteria contribute actively to the decomposition of cellulose and hemicellulose in forest soil; however, their role in this process is still unclear. Here we performed the screening and identification of bacteria showing potential cellulolytic activity from litter and organic so...
ORGANISM(S): Mucilaginibacter Pedobacter sp. Luteibacter 
2016-05-02 | PXD003844 | Pride
Decomposition Gelc-ms/ms Forest soil bacteria 
ProteomicsFungi isolated from ants, anthills, and the soil of Mexican cloud forest
The database consists of 248 HPLC-QTOF-HRMS/MS analyses of microscopic fungi isolated from soil samples collected in 2021, in the cloud forest of central Veracruz, Mexico. Soil samples were collected from around of 17 ant nests, from inside of 15 anthills, and from two transit areas. Also entomogeni...
ORGANISM(S): 248 Morphotypes 
2024-04-08 | MSV000094490 | MassIVE
ProteomicsLinking soil microbial community traits to the soil storage potential of dissolved organic carbon from surface plant litter
Using Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) on microcosm samples from early phase plant litter degradation, we found that proteins and condensed hydrocarbons are the compounds with the strongest correlation to dissolved organic carbon (DOC) concentration. Proteins co...
ORGANISM(S): Environmental Samples <bacteria> (ncbitaxon:48479) 
MSV000088109 | MassIVE
ProteomicsSoil Metaproteomics LC-MS
Sensitive models of climate change impacts would require a better integration of multi-omics approaches that connect the abundance and activity of microbial populations. Here, we show that climate is a fundamental driver of the protein abundance of microbial populations (metaproteomics), yet not the...
ORGANISM(S): Escherichia coli 
2022-03-01 | PXD009773 | Pride
Shotgun Lc-ms Metaproteomics Climate change Soil 
Genomicsintensive managed moso bamboo forest soil bacteria
intensive managed moso bamboo forest soil bacteria Genome sequencing and assembly
PRJNA487518 | ENA
UnknownBacteria and Soil Enzymes Supporting the Valorization of Forested Soils.
Not available
S-EPMC9102912 | biostudies-literature
UnknownRapid recovery of soil bacterial communities after wildfire in a Chinese boreal forest.
Not available
S-EPMC3899593 | biostudies-literature
OtherDifferential effects of nitrogen addition on soil organic carbon decomposition correlate with changes in microbial C-degradation functional potentials in a Pinus tabulaeformis forest
Anthropogenic nitrogen (N) deposition may affect soil organic carbon (SOC) decomposition, thus affecting the global terrestrial carbon (C) cycle. However, it remains unclear how the level of N deposition affects SOC decomposition by regulating microbial community composition and function, especially...
ORGANISM(S): Archaea uncultured soil microorganism Bacteria Eukaryota Viruses 
2022-03-01 | GSE147041 | GEO
UnknownCommunity composition and functioning of denitrifying bacteria from adjacent meadow and forest soils.
Not available
S-EPMC201216 | biostudies-literature
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