Fournier C C - OmicsDI

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Unknown (1129)
Proteomics (92)
Transcriptomics (39)
Genomics (3)
Metabolomics (2)

Organisms

Homo sapiens (55)
Rattus norvegicus (17)
Bos taurus (15)
Mus musculus (8)
Frankia alni ACN14a (4)
Arabidopsis thaliana (4)
Canis lupus familiaris (4)
Saccharomyces cerevisiae (3)
Alnus glutinosa (3)
Medicago truncatula (2)
Populus tremula x Populus alba (2)
299391 (2)
Escherichia coli (2)
Schizosaccharomyces pombe (2)
Xenopus laevis (2)
Mycobacterium tuberculosis (1)
Enterococcus faecalis V583 (1)
Escherichia coli K-12 (1)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (1)
Streptococcus agalactiae 2603V/R (1)
Bdellovibrio bacteriovorus HD100 (1)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (1)
Drosophila melanogaster (1)
Emiliania huxleyi (1)
Eubacteriaceae bacterium PEH A (1)
Flavobacterium johnsoniae UW101 (1)
Frankia alni (1)
Influenza A virus (A/WSN/1933(H1N1)) (1)
Methylomonas denitrificans (1)
Nitratidesulfovibrio vulgaris str. Hildenborough (1)

Organisms

Drosophila melanogaster (1)

Repository

pride (88)
biostudies-arrayexpress (42)
MassIVE (3)
MetaboLights (2)
PanoramaPublic (1)
ENA (1)

Tissue

Cell culture (20)
Brain (9)
Macrophage (5)
Astrocyte (3)
Epithelial cell (3)
Primary cell (3)
Blood (2)
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T cell (2)
B cell (1)
Blood plasma (1)
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Colon (1)
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Duodenum glandular cell (1)
Embryo (1)
Embryonic stem cell (1)
Extracellular vesicle (1)
Fibroblast (1)
Gastrointestinal tract (1)
Leaf (1)

Disease

Breast cancer (3)
Brain glioblastoma multiforme (2)
Cervix carcinoma (2)
Glioblastoma (2)
Wounds and Injuries (2)
Invasive pituitary adenoma (1)
1dpi (1)
Tumor (1)
Normal (1)
Axonal neuropathy (1)
Brain cancer (1)
Colon cancer (1)
Human cytomegalovirus infection (1)
Influenza (1)
Insulin dependent type diabetes mellitus uncontrolled with ketoacidosis (1)
Intellectual disability (1)
Malignant neoplasm of ovary (1)
Multiple sclerosis (1)
Propionic acidemia (1)
Proteasome-associated autoinflammatory syndrome 1 (1)
Proteasome-associated autoinflammatory syndrome 3 (1)
Rheumatoid arthritis (1)
Sarcoma (1)
Spinal cord disease (1)
Stroke (1)

Technology Type

Mass Spectrometry (88)
Shotgun proteomics (51)
Affinity purification coupled with mass spectrometry proteomics (13)
Bottom-up proteomics (13)
Chemical cross-linking coupled with mass spectrometry proteomics (9)
Data-dependent acquisition (7)
SWATH MS (7)
Top-down proteomics (5)
Gel-based experiment (4)
Data-independent acquisition (3)
Mass spectrometry (2)
Mass spectrometry imaging (2)
SRM/MRM (2)

Instrument Platform

Orbitrap Fusion ETD (2)
MA900, Sony (1)
10x Chromium Controller (1)
ScanArray [PerkinElmer] (1)
Illumina NovaSeq 6000 (1)
NextSeq 500 (1)
LTQ (1)
Direct infusion MS - (1)
Direct infusion MS - positive (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2025 (15)
2023 (13)
2021 (11)
2018 (10)
2014 (9)
2026 (9)
2019 (8)
2016 (8)
2010 (8)
2022 (8)
2024 (7)
2017 (6)
2015 (6)
2013 (5)
2020 (4)
2011 (3)
2008 (2)
2009 (1)
2007 (1)
2005 (1)

CHEBI ID

CHEBI:131608 (1)
CHEBI:132032 (1)
CHEBI:132034 (1)
CHEBI:132037 (1)
CHEBI:132489 (1)
CHEBI:132503 (1)
CHEBI:132731 (1)
CHEBI:133719 (1)
CHEBI:134012 (1)
CHEBI:134236 (1)
CHEBI:134237 (1)
CHEBI:134265 (1)
CHEBI:134487 (1)
CHEBI:135533 (1)
CHEBI:135821 (1)
CHEBI:137155 (1)
CHEBI:137164 (1)
CHEBI:137228 (1)
CHEBI:137570 (1)
CHEBI:137653 (1)
CHEBI:137655 (1)
CHEBI:138860 (1)
CHEBI:140471 (1)
CHEBI:140901 (1)
CHEBI:140902 (1)
CHEBI:140947 (1)
CHEBI:140986 (1)
CHEBI:140987 (1)
CHEBI:141291 (1)
CHEBI:142218 (1)

Metabolite Name

(25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-) (1)
(S)-Succinyldihydrolipoamide (1)
(Z)-22-Hentriacontene-2,4-dione (1)
1,2-Epoxy-1,2,7,7',8,8',11,12-octahydro-psi,psi-carotene (1)
1,20-Eicosanediol (1)
2-Amino-3-carboxymuconic acid semialdehyde (1)
24,25,26,27-Tetranor-23-oxo-hydroxyvitamin D3 (1)
3'-Deaminofusarochromanone (1)
3-(3-hydroxyphenyl)-2-phenyl-4-[(E)-2-phenylethenyl]-2,3-dihydro-1-benzofuran-6-ol (1)
5-Hydroxy-6-methoxyindole glucuronide (1)
6-[(3-carboxy-3-hydroxy-2-{[3-(4-hydroxy-3-methoxyphenyl)prop-2-enoyl]oxy}propanoyl)oxy]-3,4,5-trihydroxyoxane-2-carboxylic acid (1)
6-phosphogluconic acid (1)
9-cis-beta-Carotene (1)
Albanin F (1)
Artemoin C (1)
Bis(4-isothiocyanatobutyl) disulfide (1)
Brassinolide (1)
Bufotenine O-glucoside (1)
Cholest-5-ene (1)
D-Ribose 5-phosphate (1)
D-glucosamine 6-phosphate (1)
D-ribulose-15-bisphosphate (1)
DG(16:0) (1)
DG(35:3) (1)
DG(36:3) (1)
DG(36:4) (1)
DG(40:6) (1)
DHAP(8:0) (1)
Epoxymurin A (1)
Epoxysiderol (1)

First Public Date

2015 (1)

Study type

Transcription profiling by array (29)
Methylation profiling by array (4)
RNA-seq of coding RNA (3)
ChIP-seq (2)
Human - One-color microarray (1)
ChIP-chip by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (118)
2021 (109)
2025 (96)
2023 (93)
2019 (85)
2024 (81)
2020 (77)
2018 (77)
2016 (70)
2017 (62)
2015 (62)
2014 (55)
2013 (45)
2011 (24)
2010 (21)
2026 (20)
2012 (18)
2009 (15)
2008 (10)
2007 (7)
2002 (7)
2006 (5)
2005 (4)
2003 (4)
2004 (2)
2001 (1)
2000 (1)
1999 (1)
1998 (1)

Lab affiliation

Sir William Dunn School of Pathology, University of Oxford (4)
Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes (URMITE) UMR 6236, Faculté de médecine 27 Bd Jean Moulin 13385 MARSEILLE Cedex 05 FRANCE (4)
Department of Biochemistry, University of Oxford (3)
PRISM - Unité Inserm 1192 Université de Lille France (3)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (2)
Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC)- UMR 7104 CNRS, INSERM U964, Université de Strasbourg (UdS) (2)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (2)
Laboratoire Protéomique, Réponse Inflammatoire et Spectrométrie de Masse (PRISM) - INSERM U1192 - Université Lille 1, Bât SN3, 1er étage, Cité Scientifique, F-59655 Villeneuve d’Ascq Cedex (2)
PRISM - Unité INSERM 1192 Université de Lille France (2)
Univ. Lille, Inserm, U-1192 - Laboratoire Protéomique, Réponse Inflammatoire et Spectrométrie de Masse-PRISM, F-59000 Lille, France (2)
CEA-Marcoule, DRF-Li2D, 30200 Bagnols-sur-Cèze, France (1)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (1)
Cellular Signaling and Nuclear Dynamics Program, Institut de Génétique et de Biologie Moléculaire et Cellulaire, UMR 7104, INSERM U964, 1 rue Laurent Fries, 67404 Illkirch, France. (1)
Centre de recherche du Centre Hospitalier Universitaire (CHU) de Quebec-Université Laval, Québec, QC, Canada Centre de recherche sur le cancer de l’Université Laval, Québec, QC, Canada PROTEO-Quebec Network for Research on Protein Function, Engineering, and Applications, Québec, QC, Canada Department of Molecular Biology, Medical Biochemistry and Pathology, Université Laval, Québec, QC, Canada (1)
Charles Perkins Centre, School of Medical Sciences, University of Sydney, Sydney, Australia. (1)
Deaprtment of Biochemistry, University of Oxford (1)
Department of Biochemistry, University of Oxford, OX13QU, Oxford, United Kingdom (1)
Department of Biochemistry, University of Oxford, Oxford, OX1 3QU, UK (1)
Department of Biochemistry, University of Oxford, United Kingdom (1)
Department of Earth Sciences, University of Oxford (1)
Department of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia (1)
Department of Oncology / University of Oxford (1)
Département de Biochimie, Université de Sherbrooke, Québec, Canada (1)
Functional Urology Research Lab, DBMR, University of Bern, 3008 Bern, Switzerland (1)
Head of the Curie Institute Mass Spectrometry Platform (1)
Head of the Curie Institute Mass Spectrometry platform (LSMP) (1)
Institut de Génétique et de Biologie Moléculaire et Cellulaire IGBMC, Illkirch, France  Centre National de la Recherche Scientifique, UMR7104, Illkirch, France  Institut National de la Santé et de la Recherche Médicale, U964, Illkirch, France  Université de Strasbourg, Illkirch, France (1)
Institut de Pharmacologie et de Biologie Structurale, IPBS, Université de Toulouse, CNRS, UPS, Toulouse, France. (1)
Institute for Molecular Biosciences University of Queensland Brisbane Qld 4072 Australia (1)
Institute of Molecular Biology (IMB), Mainz 55128, Germany (1)

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A focus reduction neutralization assay for hepatitis C virus neutralizing antibodies.

Not available

S-EPMC1852297 | biostudies-literature

Transcription profiling of Medicago truncatula responses to Colletotrichum species

We have previously showed a strong genetic determinant governing resistance of the M. truncatula A17 line to C. trifolii is located in a chromosomal region at the top of chromosome 4 (Ameline-torregrosa et al., 2008). This region also contains the RCT1 gene which has been shown to confer resistance ...

ORGANISM(S): Medicago truncatula

2010-09-01 | E-MEXP-2349 | biostudies-arrayexpress

Interactome analysis of human Rab11a with proteins from influenza A virus infected cell lysates

The aim of this project was to determine which viral and host proteins bind to purified recombinant human GTPase Rab11a from lysates of HEK-293T cells infected with influenza A/WSN/33 (H1N1) virus. To this aim we used a GST pull-down assay. Approximately 8∙106 HEK-293T cells were infected with influ...

ORGANISM(S): Homo sapiens (Human) Influenza A virus (A/WSN/1933(H1N1))

2022-01-17 | PXD030058 | Pride

PALB2 acetylation by KAT2A/B (GCN5/PCAF) in vitro

PArtner and Localizer of BRCA2 (PALB2) is essential to maintain genome stability in human cells. Upon DNA damage by double DNA strand breaks, PALB2 is required to repair DNA by homologous recombination. In undamaged conditions, PALB2 protects coding regions, by preventing DNA stress due to collision...

ORGANISM(S): Homo sapiens (Human)

2023-03-10 | PXD014681 | Pride

Acetylation Dna repair

Carbonic Anhydrase XII Expression Is Modulated during Epithelial Mesenchymal Transition and Regulated through Protein Kinase C Signaling.

Not available

S-EPMC7037142 | biostudies-literature

Protein Kinase C activation regulates NDRG1 expression

N-myc downstream regulated gene 1 (NDRG1) is a member of the NDRG family of intracellular proteins, and plays a central role in a wide range of biological processes including stress response, differentiation, and maintenance of the myelin sheath. The overexpression of NDRG1 is an indicator of poor p...

ORGANISM(S): Homo sapiens (Human)

2025-05-06 | PXD045164 | Pride

Tnbc Breast cancer Pkc Ndrg1

Hepatitis C Virus Resistance to Carbohydrate-Binding Agents.

Not available

S-EPMC4752358 | biostudies-literature

Synthesis of Functionalized Dihydrobenzofurans by Direct Aryl C-O Bond Formation under Mild Conditions.

Not available

S-EPMC5189712 | biostudies-literature

Molecular Analysis of a Congenital Myasthenic Syndrome Due to a Pathogenic Variant Affecting the C-Terminus of ColQ.

Not available

S-EPMC10671321 | biostudies-literature