Fox A A - OmicsDI

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Unknown (13098)
Transcriptomics (762)
Genomics (546)
Proteomics (98)
Metabolomics (15)
Other (9)
Models (3)
Genomic (3)
Methylation profiling (3)
Multiomics (1)

Organisms

Homo sapiens (433)
Mus musculus (341)
Drosophila melanogaster (37)
Arabidopsis thaliana (27)
Caenorhabditis elegans (23)
Saccharomyces cerevisiae (21)
Rattus norvegicus (16)
Glycine max (15)
Danio rerio (12)
Medicago truncatula (9)
Streptomyces venezuelae (9)
Macaca mulatta (7)
Schizosaccharomyces pombe (5)
Oryza sativa (5)
Escherichia coli (5)
Larinioides sclopetarius (4)
Anopheles gambiae (4)
Sus scrofa (4)
Papio anubis (3)
Spodoptera frugiperda (3)
Lolium perenne (3)
Zea mays (3)
Staphylococcus aureus (3)
Hordeum vulgare (3)
Solanum lycopersicum (3)
Oryza sativa Japonica Group (3)
Candida albicans (3)
Canis lupus familiaris (2)
Drosophila willistoni (2)
Amphimedon queenslandica (2)

Organisms

Homo sapiens (88)
Mus musculus (81)
Saccharomyces cerevisiae (6)
Vulpes lagopus (5)
Drosophila melanogaster (5)
Pteropus alecto (3)
Pteropus rufus (3)
Rattus norvegicus (3)
Metallosphaera sedula (2)
Vulpes vulpes (2)
Fusarium oxysporum (2)
feces metagenome (2)
Danio rerio (2)
Zoysia mosaic virus (1)
Cryptosporidium canis (1)
Leptospira interrogans serovar Pomona str. Fox 32256 (1)
Mycoplasma sp. CB698 (1)
Vulpes vulpes japonica (1)
Colossoma macropomum (1)
Pseudomonas monteilii (1)
Alopecurus myosuroides (1)
invertebrate metagenome (1)
Ciona robusta (1)
Pteropus vampyrus (1)
Callithrix jacchus (1)
Pteropus pselaphon (1)
synthetic construct (1)
Ciona intestinalis (1)
Schmidtea mediterranea (1)
Caenorhabditis elegans (1)

Repository

biostudies-arrayexpress (875)
ENA (295)
geo (102)
pride (84)
EGA (48)
MetaboLights (11)
MassIVE (7)
jPOST (5)
GNPS (4)
BioModels (3)
dbGaP (3)
iProX (1)
PanoramaPublic (1)

Tissue

Cell culture (24)
Brain (7)
Epithelial cell (5)
Skin (4)
Dentin (3)
Fibroblast (3)
Liver (3)
Blood (2)
Bone (2)
Colon (2)
Hepatocyte (2)
Peripheral blood mononuclear cell (2)
Tooth (2)
Tooth enamel (2)
Antler (1)
B cell (1)
Blood cell (1)
Blood plasma (1)
Blood serum (1)
Cell suspension culture (1)
Colostrum (1)
Endometrial cancer cell line (1)
Endosperm (1)
Gastrointestinal stromal tumor cell (1)
HEK-293T cell (1)
Hair (1)
Hair shaft (1)
HeLa cell (1)
Heart (1)
T cell (1)

Disease

Malignant neoplasm of ovary (5)
Breast cancer (4)
Colon cancer (4)
Parkinson's disease (3)
Osteosarcoma (2)
Normal (2)
Disease free (2)
HIV encephalitis (1)
Moderate (1)
Melanoma (1)
(-)ssRNA virus infectious disease (1)
COVID-19 (1)
Cancer (1)
Endometrial cancer (1)
Glioblastoma (1)
Human immunodeficiency virus infectious disease (1)
Inflammatory bowel disease (1)
Male infertility (1)
Oral squamous cell carcinoma (1)
Prostate adenocarcinoma (1)
Severe acute respiratory syndrome (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (84)
Shotgun proteomics (47)
Bottom-up proteomics (16)
Affinity purification coupled with mass spectrometry proteomics (11)
Mass spectrometry (8)
SWATH MS (8)
Data-dependent acquisition (7)
Top-down proteomics (6)
Gel-based experiment (3)
Mass spectrometry assay (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
Immunopeptidomics (2)
SRM/MRM (2)
NMR spectroscopy (1)
Glycoproteomics (1)
HDMSE (1)

Instrument Platform

Illumina HiSeq 2000 (45)
Illumina HiSeq 2500 (43)
Illumina NovaSeq 6000 (36)
NextSeq 500 (16)
Illumina HiSeq 4000 (11)
NextSeq 2000 (9)
Illumina Genome Analyzer II (5)
NA (3)
NextSeq 550 (3)
Bioanalyzer 2200 (2)
Chromium Controller (2)
Illumina MiSeq (2)
Illumina HiSeq 3000 (2)
UC Irvine HPC (1)
Bioanalyzer, Nanodrop, (1)
NaN (1)
10x Genomics Chromium controller; Agilent 2100 Bioanalyzer and Qubit fluorometer (Thermo Fisher) for QC (1)
10x Genomics Chromium controller (GEM generation on Chromium Next GEM Chip G) (1)
BD FACSAria cell sorter (viable-cell sorting); Countess III cell counter (Thermo Fisher; viability check) (1)
Illumina-compatible library preparation equipment (1)
Monarch RNA purification column system (1)
Standard mammalian cell culture equipment (1)
Thermal cycler; magnetic separation rack; Qubit Fluorometer; Agilent TapeStation 4200 (1)
Microcentrifuge; magnetic separation rack; Qubit Flu/spectrophotometer; Agilent TapeStation 4200 (1)
Incubator shaker; spectrophotometer; Cmag measurement system; flow cytometer (1)
Element AVITI (1)
PureLink RNA Mini Kit (1)
Illumina TruSeq (1)
HiSeq 1500 (1)
ScanArray 4000 [PerkinElmer] (1)

Publication Date

2015 (164)
2014 (146)
2013 (118)
2016 (107)
2012 (69)
2010 (63)
2011 (50)
2022 (46)
2026 (39)
2025 (38)
2024 (36)
2023 (34)
2021 (32)
2020 (31)
2018 (26)
2008 (26)
2019 (20)
2009 (19)
2017 (17)
2005 (5)
2007 (5)
2004 (1)

UNIPROT ID/AC

A0FLQ6 (1)
A3QMC1 (1)
A3QMC2 (1)
A3QMC8 (1)
A3RMS7 (1)
A4LBC2 (1)
A4LBC3 (1)
A4UVJ6 (1)
A4UVJ7 (1)
A5HU89 (1)
A5HU98 (1)
A5HWB2 (1)
A5JYS0 (1)
A5JYS1 (1)
A5JYS4 (1)
A5JYS7 (1)
A5JYT6 (1)
A5JYW2 (1)
A5JYX4 (1)
A5JYX5 (1)
A5JYX6 (1)
A5JYY0 (1)
A5PEY3 (1)
A5Z2U3 (1)
A5Z2U5 (1)
A5Z2U6 (1)
A5Z2X2 (1)
A6PVA4 (1)
A7LPE5 (1)
A7LPE6 (1)

CHEBI ID

CHEBI:30769 (4)
CHEBI:15354 (3)
CHEBI:16643 (3)
CHEBI:16919 (3)
CHEBI:17368 (3)
CHEBI:29016 (3)
CHEBI:30915 (3)
CHEBI:70744 (3)
CHEBI:10093 (2)
CHEBI:1148 (2)
CHEBI:15428 (2)
CHEBI:15741 (2)
CHEBI:15843 (2)
CHEBI:15887 (2)
CHEBI:15901 (2)
CHEBI:15940 (2)
CHEBI:15956 (2)
CHEBI:16015 (2)
CHEBI:16040 (2)
CHEBI:16235 (2)
CHEBI:16335 (2)
CHEBI:16347 (2)
CHEBI:16349 (2)
CHEBI:16359 (2)
CHEBI:16467 (2)
CHEBI:16610 (2)
CHEBI:16704 (2)
CHEBI:16708 (2)
CHEBI:16737 (2)
CHEBI:16742 (2)

Metabolite Name

3-Hydroxymandelic acid (2)
Ajmaline (2)
Arginine (2)
Caffeate (2)
Chenodeoxycholic acid (2)
Deoxycholic acid (2)
Formononetin (2)
Glutathione (2)
LPC 18:1 (2)
LPC 18:3 (2)
Leucine (2)
Phenol (2)
Tabersonine (2)
Taurocholic acid (2)
Taurodeoxycholic acid (2)
Thymidine (2)
Tryptophan (2)
Valine (2)
Voacamine (2)
Yohimbine (2)
(+)-Abscisic acid (1)
(+)-Camphor (1)
(+)-Costunolide (1)
(+)-beta-Selinene (1)
(+)-trans-C75 (1)
(-)-11-Nor-9-carboxy-.DELTA.9-THC (1)
(-)-Catechin (1)
(-)-Jasmonic acid (1)
(-)-Syringaresinol-4-O-.beta.-D-glucopyranoside (1)
(.+/-.)-Vestitol (1)

First Public Date

2014 (51)
2024 (35)
2026 (29)
2025 (26)
2023 (25)
2022 (19)
2020 (19)
2021 (18)
2018 (15)
2017 (15)
2016 (13)
2013 (11)
2015 (10)
2019 (9)

Modelling Approach

Ordinary differential equation model (2)
Other (1)

Lab affiliation

Cancer Biology Department, Fox Chase Cancer Center, Philadelphia, PA, USA (4)
University of Mississippi (3)
Department of Neurological Sciences, University of Nebraska Medical Center, Omaha NE (2)
University of Nebraska Medical Center (2)
1.Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, 3010 Bern, Switzerland. 2.Department for BioMedical Research, University of Bern, 3008 Bern, Switzerland. 3. Conway Institute for Biomolecular and Biomedical Research, University College Dublin, Dublin D04 V1W8, Ireland. (1)
Academia Sinica Institute of Biological Chemistry(IBC), Dr. Shih-Hsiung Wu's lab, Taipei, Taiwan (R.O.C.) (1)
Assistant Professor Department of Medicine, Division of Endocrinology, Metabolism, and Nutrition Department of Pharmacology and Cancer Biology Duke University Medical Center (1)
Associate Professor Microbiology and Immunology Department Upstate Medical University Weiskotten Hall Rm. 2273 766 Irving Avenue Syracuse, NY 13210 Tel 315.464.5870 (1)
Associate Professor; Director of the Molecular and Applied Sciences Laboratory and Applied Physiology Laboratory (1)
Associate professor, department of Biology. University of Rochester,NY, USA University of Rochester Mass Spectrometry Resource Laboratory, NY, USA ( lab head ) (1)
Avaxia Biologics, Inc. (1)
BioArCh, University of York, United Kingdom (1)
Bioengineering (1)
Brazilian Biosciences National Laboratory (LNBio), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Sao Paulo, Brazil. (1)
Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, UK (1)
Cancer Biology Program, Fox Chase Cancer Center, Philadelphia, PA, USA (1)
Cancer Biology, Fox Chase Cancer Center, Philadelphia, Pennsylvania, United States (1)
Cancer Signaling & Microenvironment Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania, United States (1)
Cancer Signaling and Epigenetics Program, Fox Chase Cancer Center, Phialdelphia, PA, USA (1)
Cancer Signaling and Epigenetics Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania, United States (1)
Cancer Signaling and Microenvironment Program,Fox Chase Cancer Center, Philadelphia, PA, USA (1)
DAI Medicina di Laboratorio e Trasfusionale, ‘Federico II’University of Naples, 80131 Naples, Italy (1)
Department of BioMOlecular Sciences University of Mississippi (1)
Department of Biochemistry and Molecular Biology, Hatters Lab, University of Melbourne, Australia (1)
Department of Biochemistry, Emory School of Medicine, Atlanta, Georgia, USA (1)
Department of Biology, University of Copenhagen, Denmark. (1)
Department of Biomedical and Clinical Sciences (BKV), Linköping University, Linköping, Sweden; Wallenberg Centre for Molecular Medicine (WCMM), Linköping University, Linköping, Sweden. (1)
Department of Biotechnology, Delft University of Technology, The Netherlands. (1)
Department of Cardiovascular and Metabolic Sciences, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH 44195, USA (1)
Department of Chemistry, Imperial College London, UK Chemical Glycobiology Laboratory, The Francis Crick Institute, London, UK (1)

IsPrivate

False (3)

Model Flag

Non Kinetic (1)

Classification

fungi (2)
bacteria (2)
protozoa (1)
viruses (1)

Modification

4x(15)N labeled L-arginine (1)

Study type

RNA-seq of coding RNA (346)
Transcription profiling by array (189)
ChIP-seq (137)
RNA-seq of non coding RNA (48)
Methylation profiling by high throughput sequencing (34)
Transcription profiling by tiling array (17)
Other (12)
RNA-seq of coding RNA from single cells (12)
RNA-seq of total RNA (12)
Cell line - High-throughput sequencing (7)
Unknown experiment type (6)
ChIP-chip by tiling array (6)
Methylation profiling by array (6)
DNA-seq (5)
Comparative genomic hybridization by array (4)
Single nucleus RNA sequencing (4)
High-throughput sequencing (3)
Animal - High-throughput sequencing (3)
Genotyping by array (3)
ATAC-seq (3)
Human - High-throughput sequencing (2)
ChIP-chip by array (2)
MicroRNA profiling by high throughput sequencing (2)
Ribo-seq (2)
MicroRNA profiling by array (2)
Genotyping by high throughput sequencing (2)
MNase-seq (1)
Plant - High-throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
Bisulfite-seq (1)

Release Date

2022 (1274)
2021 (1232)
2023 (1167)
2025 (1106)
2020 (1077)
2024 (1072)
2019 (900)
2018 (825)
2015 (755)
2016 (742)
2017 (720)
2014 (631)
2013 (491)
2012 (382)
2011 (350)
2010 (306)
2009 (207)
2026 (179)
2008 (165)
2007 (94)
2005 (70)
2006 (60)
2003 (44)
2004 (29)
2000 (24)
2001 (17)
1999 (16)
1998 (16)
2002 (12)
1997 (5)

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Transcription profiling of silver fox brain selected for tame behavior vs non-selected silver fox

Comparison of brain gene expression between silver foxes selected for tame behavior and non-selected silver fox.

ORGANISM(S): Vulpes vulpes

2005-12-31 | E-MEXP-451 | biostudies-arrayexpress

FOX transcription factors are common regulators of Wnt/β-catenin signaling

The Wnt/β-catenin signaling pathway is a critical regulator of development and stem cell maintenance. Mounting evidence suggests that the context-specific outcome of Wnt signaling is determined by the collaborative action of multiple transcription factors, including members of the highly conserved f...

ORGANISM(S): Homo sapiens (Human)

2023-04-19 | PXD038811 | Pride

Investigation of the threonine metabolism of Echinococcus multilocularis: EmTDH as a potential drug target in alveolar echinococcosis

Alveolar echinococcosis is a severe zoonotic disease caused by the fox tapeworm E. multilocularis. New treatment options are urgently needed. Whole-organism-based screening allows the discovery of potential new anti-echinococcal compounds, but suffers from low- to medium-throughput. An alternative a...

2026-09-14 | MTBLS10738 | MetaboLights

Fox serum proteomics analysis suggests host-specific responses to Angiostrongylus vasorum infection

Dogs infected with the cardiopulmonary nematode Angiostrongylus vasorum may suffer respiratory distress and/or bleeding disorders. Descriptions of clinical signs in foxes are rare, despite high prevalence. To evaluate the impact of infection on coagulation and immune response, serum proteins from ei...

ORGANISM(S): Vulpes vulpes (Red fox)

2021-11-25 | PXD028312 | Pride

Proteomics Angiostrongylus vasorum Vulpes vulpes Immune response Coagulation Fox

Requirement for Shh and Fox family genes at different stages in sweat gland development

Sweat glands play a fundamental role in thermal regulation in man, but the molecular mechanism of their development remains unknown. To initiate analyses, we compared the model of Eda mutant Tabby mice, in which sweat glands were not formed, to wild-type mice. We inferred developmental stages and c...

ORGANISM(S): Mus musculus

2010-05-05 | E-GEOD-14907 | biostudies-arrayexpress

Gene expression in aerial parts of rice-Arabidopsis Os-LBD37 FOX plants

Aerial parts of the rice-Arabidopsis FOX (Full-length cDNA overexpressor) lines K16331 and K19624 harboring the rice FL cDNA of LBD37 (Os-LBD37) were analyzed. LBD37 belongs to the plant- specific LOB- (Lateral Organ Boundary) domain family proteins first characterized in Arabidopsis. Results point ...

ORGANISM(S): Arabidopsis thaliana

2009-12-26 | E-GEOD-14646 | biostudies-arrayexpress

Structural Analysis of Phosphorylation Proteoforms in a Dynamic Heterogeneous System Using Flash Oxidation Coupled In-Line with Ion Exchange Chromatography

Protein post-translational modifications (PTMs) are key modulators of protein structure and function that often change in a dynamic fashion in response to cellular stimuli. Dynamic post-translational modifications are very challenging to structurally characterize using modern techniques, including c...

ORGANISM(S): Gallus gallus (Chicken)

2023-01-16 | PXD037050 | Pride

Flash oxidation Ovalbumin Phosphoproteoforms Lc-fox

Vulpes lagopus breed:blue fox

Vulpes lagopus breed:blue fox Genome sequencing

PRJNA644252 | ENA

Gray and Island Fox

Gray fox (Urocyon cinereoargenteus) and island fox (Urocyon littoralis) Raw sequence reads

PRJNA478450 | ENA

Leptospira interrogans serovar Pomona str. Fox 32256

Leptospira Genomics And Human Health

PRJNA177162 | ENA

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14537 Results

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