Fox L L - OmicsDI

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Unknown (4303)
Transcriptomics (666)
Genomics (231)
Proteomics (32)
Metabolomics (12)
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Other (1)

Organisms

Homo sapiens (335)
Mus musculus (286)
Drosophila melanogaster (31)
Arabidopsis thaliana (26)
Caenorhabditis elegans (23)
Glycine max (15)
Saccharomyces cerevisiae (12)
Rattus norvegicus (11)
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Streptomyces venezuelae (9)
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Oryza sativa (5)
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Metallosphaera sedula (2)
Capra hircus (2)

Organisms

Homo sapiens (3)
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Arabidopsis thaliana (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (839)
EGA (47)
pride (21)
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geo (2)
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Tissue

Cell culture (4)
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Disease

Osteosarcoma (2)
Normal (2)
HIV encephalitis (1)
Melanoma (1)
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(-)ssRNA virus infectious disease (1)
COVID-19 (1)
Cancer (1)
Disease free (1)
Endometrial cancer (1)
Glioblastoma (1)
Human immunodeficiency virus infectious disease (1)
Parkinson's disease (1)
Severe acute respiratory syndrome (1)

Technology Type

Mass Spectrometry (21)
Shotgun proteomics (11)
Mass spectrometry (7)
Bottom-up proteomics (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Data-dependent acquisition (3)
Mass spectrometry assay (2)
SWATH MS (2)
NMR spectroscopy (1)
Gel-based experiment (1)
HDMSE (1)
Immunopeptidomics (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (43)
Illumina HiSeq 2500 (42)
Illumina NovaSeq 6000 (31)
NextSeq 500 (16)
Illumina HiSeq 4000 (11)
NextSeq 2000 (9)
Illumina Genome Analyzer II (4)
NA (3)
NextSeq 550 (3)
Bioanalyzer 2200 (2)
Chromium Controller (2)
Illumina HiSeq 3000 (2)
UC Irvine HPC (1)
Bioanalyzer, Nanodrop, (1)
NaN (1)
10x Genomics Chromium controller; Agilent 2100 Bioanalyzer and Qubit fluorometer (Thermo Fisher) for QC (1)
10x Genomics Chromium controller (GEM generation on Chromium Next GEM Chip G) (1)
BD FACSAria cell sorter (viable-cell sorting); Countess III cell counter (Thermo Fisher; viability check) (1)
Illumina-compatible library preparation equipment (1)
Monarch RNA purification column system (1)
Standard mammalian cell culture equipment (1)
Thermal cycler; magnetic separation rack; Qubit Fluorometer; Agilent TapeStation 4200 (1)
Microcentrifuge; magnetic separation rack; Qubit Flu/spectrophotometer; Agilent TapeStation 4200 (1)
Incubator shaker; spectrophotometer; Cmag measurement system; flow cytometer (1)
Element AVITI (1)
PureLink RNA Mini Kit (1)
Illumina TruSeq (1)
HiSeq 1500 (1)
ScanArray 4000 [PerkinElmer] (1)
GenePix Personal 4100A [Axon Instruments] (1)

Publication Date

2015 (154)
2014 (132)
2013 (111)
2016 (95)
2012 (64)
2010 (59)
2011 (41)
2022 (27)
2021 (25)
2026 (24)
2025 (23)
2024 (23)
2008 (23)
2018 (18)
2019 (14)
2023 (11)
2020 (11)
2009 (11)
2017 (10)
2007 (5)
2005 (4)
2004 (1)

CHEBI ID

CHEBI:30769 (3)
CHEBI:15354 (2)
CHEBI:15428 (2)
CHEBI:16015 (2)
CHEBI:16643 (2)
CHEBI:16857 (2)
CHEBI:16919 (2)
CHEBI:17053 (2)
CHEBI:17268 (2)
CHEBI:17368 (2)
CHEBI:29016 (2)
CHEBI:30915 (2)
CHEBI:32980 (2)
CHEBI:45744 (2)
CHEBI:70744 (2)
CHEBI:10014 (1)
CHEBI:10015 (1)
CHEBI:10016 (1)
CHEBI:10019 (1)
CHEBI:10072 (1)
CHEBI:10093 (1)
CHEBI:10443 (1)
CHEBI:10577 (1)
CHEBI:110 (1)
CHEBI:1148 (1)
CHEBI:1157 (1)
CHEBI:119928 (1)
CHEBI:131989 (1)
CHEBI:132656 (1)
CHEBI:132659 (1)

Metabolite Name

3-Hydroxymandelic acid (2)
Arginine (2)
Chenodeoxycholic acid (2)
Deoxycholic acid (2)
Leucine (2)
Taurocholic acid (2)
Taurodeoxycholic acid (2)
Voacamine (2)
(+)-Abscisic acid (1)
(+)-Camphor (1)
(+)-beta-Selinene (1)
(+)-trans-C75 (1)
(-)-11-Nor-9-carboxy-.DELTA.9-THC (1)
(-)-Catechin (1)
(-)-Jasmonic acid (1)
(-)-Syringaresinol-4-O-.beta.-D-glucopyranoside (1)
(.+/-.)-Vestitol (1)
(.+/-.)-Willardiine (1)
(.+/-.)20-HDoHE (1)
(1-Acetyloxy-3-hydroxy-6,8a-dimethyl-7-oxo-3-propan-2-yl-2,3a,4,8-tetrahydro-1H-azulen-4-yl) 4-hydroxybenzoate (1)
(19R)-9-acetyl-19-hydroxy-10,14-dimethyl-20-oxopentacyclo[11.8.0.0<2,10>.0<4,9 >.0<14,19>]henicos-17-yl acetate (1)
(2-Butoxyethoxy)acetic acid (1)
(2-Formyl-4-methoxyphenoxy)acetic acid (1)
(2E)-4-Hydroxynon-2-enoic acid (1)
(2E)-5-(4-(Carboxymethyl)-4-(methoxycarbonyl)-3-methyl-6-methylidene-2-oxooctahydro-1-benzofuran-5-yl)-3-methylpent-2-enoic acid (1)
(2E)-5-Hydroxyundec-2-enoic acid (1)
(2E)-6-Hydroxy-2,6-dimethylocta-2,7-dien-1-yl 6-O-.alpha.-L-arabinopyranosyl-.beta.-D-glucopyranoside (1)
(2E,4E)-12-Hydroxy-3,5,7-trimethyl-13-methyloltetradeca-2,4-dienedioic acid (1)
(2E,4E)-5-(3,8-Dihydroxy-1,5-dimethyl-7-oxo-6-oxabicyclo[3.2.1]octan-8-yl)-3-methylpenta-2,4-dienoic acid (1)
(2E,4E)-5-(6-((.beta.-D-Glucopyranosyloxy)methyl)-1-hydroxy-2,6-dimethyl-4-oxocyclohex-2-en-1-yl)-3-methylpenta-2,4-dienoic acid (1)

First Public Date

2018 (3)
2014 (2)
2025 (1)
2023 (1)
2022 (1)
2021 (1)
2019 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

1.Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, 3010 Bern, Switzerland. 2.Department for BioMedical Research, University of Bern, 3008 Bern, Switzerland. 3. Conway Institute for Biomolecular and Biomedical Research, University College Dublin, Dublin D04 V1W8, Ireland. (1)
Cancer Biology Department, Fox Chase Cancer Center, Philadelphia, PA, USA (1)
Cancer Signaling and Epigenetics Program, Fox Chase Cancer Center, Phialdelphia, PA, USA (1)
Department of Biomedical and Clinical Sciences (BKV), Linköping University, Linköping, Sweden; Wallenberg Centre for Molecular Medicine (WCMM), Linköping University, Linköping, Sweden. (1)
Department of Cardiovascular and Metabolic Sciences, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH 44195, USA (1)
Department of Chemistry, Imperial College London, UK Chemical Glycobiology Laboratory, The Francis Crick Institute, London, UK (1)
Department of Chemistry, Imperial College London, UK; Chemical Glycobiology Laboratory, The Francis Crick Institute, London (1)
Department of Neurological Sciences, College of Medicine, University of Nebraska Medical Center, Omaha, NE 68198, USA (1)
Department of Pharmacology and Experimental Neuroscience, University of Nebraska Medical Center, 985800 University of Nebraska Medical Center, Omaha, NE 68198-5800, USA (1)
Department of Psychiatry, Seaver Autism Center for Research and Treatment, Mindich Child Health and Development Institute, Friedman Brain Institute, Alper Center for Neural Development and Regeneration, Icahn School of Medicine at Mount Sinai, USA (1)
Friedrich-Loeffler-Institute (1)
Fungal Biodiversity and Biotechnology Laboratory team "Responses and adaptation of fungi to environmental constraints" 163 Avenue de Luminy, CP925 13288 Marseille, Cedex 9, FRANCE (1)
Hospital Clinic Barcelona (1)
Hospital Clinic Barcelona, Spain (1)
Institute of Parasitology Vetsuisse Faculty University of Zurich Winterthurerstrasse 266a 8057 Zürich Switzerland (1)
MRC Toxicology Unit, University of Cambridge, Hodgkin Building, Lancaster Road, Leicester, LE1 9HN, UK (1)
Molecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, PA, USA (1)
National Key Laboratory of Veterinary Public Health and Safety, College of Veterinary Medicine, China Agricultural University, Beijing, 100094, PR China. (1)
School of Cellular and Molecular Medicine, University Walk, Bristol BS8 1TD (1)
University of Mississippi (1)
University of Mississippi Medical Center Director, Mississippi Center for Heart Research Professor, Department of Physiology and Biophysics Research Health Scientist, Research Service G.V. (Sonny) Montgomery Veterans Affairs Medical Center (1)

IsPrivate

False (1)

Classification

fungi (2)

Modification

4x(15)N labeled L-arginine (1)

Study type

RNA-seq of coding RNA (325)
Transcription profiling by array (182)
ChIP-seq (136)
RNA-seq of non coding RNA (46)
Methylation profiling by high throughput sequencing (33)
Transcription profiling by tiling array (17)
Other (12)
RNA-seq of coding RNA from single cells (12)
RNA-seq of total RNA (11)
Methylation profiling by array (7)
ChIP-chip by tiling array (6)
Cell line - High-throughput sequencing (6)
DNA-seq (5)
Unknown experiment type (4)
Comparative genomic hybridization by array (4)
Single nucleus RNA sequencing (4)
High-throughput sequencing (3)
Animal - High-throughput sequencing (3)
Genotyping by array (3)
ATAC-seq (3)
Human - High-throughput sequencing (2)
ChIP-chip by array (2)
Ribo-seq (2)
MicroRNA profiling by array (2)
Genotyping by high throughput sequencing (2)
MNase-seq (1)
Plant - High-throughput sequencing (1)
MicroRNA profiling by high throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
Bisulfite-seq (1)

Release Date

2022 (451)
2025 (441)
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2024 (393)
2020 (365)
2015 (355)
2019 (302)
2016 (289)
2014 (274)
2018 (257)
2013 (240)
2017 (208)
2012 (173)
2011 (140)
2010 (128)
2026 (73)
2009 (68)
2008 (53)
2007 (21)
2006 (14)
2005 (13)
2004 (8)
2002 (6)
1999 (5)
2003 (4)
2000 (2)
1998 (2)
2001 (1)
1997 (1)

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Transcription profiling of silver fox brain selected for tame behavior vs non-selected silver fox

Comparison of brain gene expression between silver foxes selected for tame behavior and non-selected silver fox.

ORGANISM(S): Vulpes vulpes

2005-12-31 | E-MEXP-451 | biostudies-arrayexpress

FOX transcription factors are common regulators of Wnt/β-catenin signaling

The Wnt/β-catenin signaling pathway is a critical regulator of development and stem cell maintenance. Mounting evidence suggests that the context-specific outcome of Wnt signaling is determined by the collaborative action of multiple transcription factors, including members of the highly conserved f...

ORGANISM(S): Homo sapiens (Human)

2023-04-19 | PXD038811 | Pride

Investigation of the threonine metabolism of Echinococcus multilocularis: EmTDH as a potential drug target in alveolar echinococcosis

Alveolar echinococcosis is a severe zoonotic disease caused by the fox tapeworm E. multilocularis. New treatment options are urgently needed. Whole-organism-based screening allows the discovery of potential new anti-echinococcal compounds, but suffers from low- to medium-throughput. An alternative a...

2026-09-14 | MTBLS10738 | MetaboLights

Response to salt stress treatment over time in Oryza sativa L. Japonica Nipponbare, RNA-seq dataset

Oryza sativa L. Japonica nipponbare seedlings were treated with 300mM NaCl or water, and then samples were taken after one hour, five hours and 24 hours, to assess which genes are differentially expressed over time during salt stress treatment. The results from this dataset are also compared with th...

ORGANISM(S): Oryza sativa Japonica Group

2015-08-25 | E-MTAB-1625 | biostudies-arrayexpress

Response to salt stress treatment over time in Oryza sativa L. Japonica Nipponbare, microarray dataset

ORGANISM(S): Oryza sativa Japonica Group

2015-12-04 | E-MTAB-1624 | biostudies-arrayexpress

Fox serum proteomics analysis suggests host-specific responses to Angiostrongylus vasorum infection

Dogs infected with the cardiopulmonary nematode Angiostrongylus vasorum may suffer respiratory distress and/or bleeding disorders. Descriptions of clinical signs in foxes are rare, despite high prevalence. To evaluate the impact of infection on coagulation and immune response, serum proteins from ei...

ORGANISM(S): Vulpes vulpes (Red fox)

2021-11-25 | PXD028312 | Pride

Proteomics Angiostrongylus vasorum Vulpes vulpes Immune response Coagulation Fox

Developmental control of CaV1.2 L-type calcium channel splicing by Fox proteins.

Not available

S-EPMC2725710 | biostudies-literature

Requirement for Shh and Fox family genes at different stages in sweat gland development

Sweat glands play a fundamental role in thermal regulation in man, but the molecular mechanism of their development remains unknown. To initiate analyses, we compared the model of Eda mutant Tabby mice, in which sweat glands were not formed, to wild-type mice. We inferred developmental stages and c...

ORGANISM(S): Mus musculus

2010-05-05 | E-GEOD-14907 | biostudies-arrayexpress

Gene expression in aerial parts of rice-Arabidopsis Os-LBD37 FOX plants

Aerial parts of the rice-Arabidopsis FOX (Full-length cDNA overexpressor) lines K16331 and K19624 harboring the rice FL cDNA of LBD37 (Os-LBD37) were analyzed. LBD37 belongs to the plant- specific LOB- (Lateral Organ Boundary) domain family proteins first characterized in Arabidopsis. Results point ...

ORGANISM(S): Arabidopsis thaliana

2009-12-26 | E-GEOD-14646 | biostudies-arrayexpress

Fox2002_IonicMechanism_CardiacMyocytes

This a model from the article: Ionic mechanism of electrical alternans. Fox JJ, McHarg JL, Gilmour RF Jr. Am J Physiol Heart Circ Physiol 2002 Feb;282(2):H516-30 11788399 , Abstract: Although alternans of...

2005-01-01 | MODEL0911665321 | BioModels

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