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MetabolomicsPseudomonas sp. Strain 273 Incorporates Organofluorine into the Lipid Bilayer during Growth with Fluorinated Alkanes
Anthropogenic organofluorine compounds are recalcitrant, globally distributed, and a human health concern. Although rare, natural processes synthesize fluorinated compounds, and some bacteria have evolved mechanisms to metabolize organofluorine compounds. Pseudomonas sp. strain 273 grows with...
2022-06-06 | MTBLS3893 | MetaboLights
MetabolomicsMetabolome patterns identify active dechlorination in bioaugmentation consortium SDC-9

Ultra-high performance liquid chromatography-high resolution mass spectrometry (UPHLC-HRMS) is used to discover and monitor single or sets of biomarkers informing about metabolic processes of interest. The technique can detect thousands of molecules (i.e., metabolites) in a single instrument run ...

2022-09-16 | MTBLS5219 | MetaboLights
TranscriptomicsThe codon 72 polymorphism of p53 regulates interactions with NF-κB and transactivation of genes involoved in immunity and inflamation
A common polymorphism at codon 72 in the p53 tumor suppressor gene encodes either proline(P72) or arginine(R72). These two variants might possess altered biological function which influences p53’s transcriptional, senescence and apoptotic functions. We found that P72 has increased apoptosis when com...
ORGANISM(S): Mus musculus 
2011-01-25 | E-GEOD-26851 | biostudies-arrayexpress
ProteomicsSirtuin inhibitors alter the food-by-temperature acclimation response to acute heat shock in Mytilus californianus
The dynamic environment of the rocky intertidal has long been used as model for understanding the physiological capacity of marine species, particularly with respect to climate change. The innate environmental variability—particularly thermal extremes—has provided insight into the cellular stress re...
ORGANISM(S): Mytilus californianus 
2026-07-28 | PXD079780 | Pride
Cellular stress response Mussel Food availability Post-translational modification Proteomics 
ProteomicsFood Dependent Activation of One Carbon Metabolism During Heat Shock in Mytilus californianus
Of the ecological factors affecting the cellular stress response (CSR), food ration has received little attention despite a likely role in stress tolerance limits. To test the interactive effects of food and temperature on the proteomic response to heat shock, the intertidal mussel Mytilus californi...
ORGANISM(S): Mytilus californianus 
2026-07-28 | PXD072074 | Pride
Cellular stress response Proteomics Carbohydrate metabolism Mytilus Oxidative stress One carbon metabolism Histone modifications 
GenomicsNHLBI Family Heart Study (FamHS-Visit1 and FamHS-Visit2)

The Family Heart Study (FamHS) was funded by the National Heart, Lung, and Blood Institute (NHLBI). It was begun in 1992 with the ascertainment of 1,200 families, half randomly sampled, and half selected because of an excess of coronary heart disease (CHD) or risk factor abnormalities as compared...

phs000221.v1.p1 | EGA
TranscriptomicsSystems-wide RNAi analysis of CASP8AP2 / FLASH
We have used a combination of RNAi based functional and molecular genomic approaches to investigate in detail two proteins required for the survival of CRC cells. Set1 has 22 samples, 10 siNeg controls, 6 siRNA transfections for FLASH and NUP62 each. Set2 has 67 samples, siNeg controls at timepoint:...
ORGANISM(S): Homo sapiens 
2012-05-06 | E-GEOD-29405 | biostudies-arrayexpress
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