Fraser C C - OmicsDI

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Genomics (110)
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Organisms

Homo sapiens (144)
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Organisms

Caenorhabditis elegans (3)
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Repository

EGA (96)
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2011 (16)
2013 (14)
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2006 (1)

CHEBI ID

CHEBI:16704 (5)
CHEBI:30769 (5)
CHEBI:15428 (4)
CHEBI:16217 (4)
CHEBI:18012 (4)
CHEBI:27897 (4)
CHEBI:28044 (4)
CHEBI:32816 (4)
CHEBI:33508 (4)
CHEBI:15741 (3)
CHEBI:15940 (3)
CHEBI:16040 (3)
CHEBI:16335 (3)
CHEBI:16449 (3)
CHEBI:16551 (3)
CHEBI:17115 (3)
CHEBI:17196 (3)
CHEBI:17368 (3)
CHEBI:17521 (3)
CHEBI:17750 (3)
CHEBI:17822 (3)
CHEBI:17964 (3)
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CHEBI:18053 (3)
CHEBI:18183 (3)
CHEBI:18186 (3)
CHEBI:18237 (3)
CHEBI:25017 (3)
CHEBI:26078 (3)
CHEBI:28300 (3)

Metabolite Name

Hypoxanthine (4)
Phenylalanine (4)
Uric acid (4)
Alanine (3)
Cytosine (3)
Glutamic acid (3)
Glutamine (3)
N-Ethylglycine (3)
Pyroglutamic acid (3)
Succinic acid (3)
Tyrosine (3)
(+)-Aspidospermidine (2)
(3-hydroxy-2-octadeca-9,12-dienoyloxypropyl) octadeca-9,12-dienoate (2)
(Z)-5-Hexadecenoic acid (2)
1,2,3,6-Tetragalloylglucose (2)
1,2,4,5-Tetrathiane (2)
1,2-Cyclohexanedione (2)
1,2-Dipalmitoyl-rac-glycero-3-phosphoethanolamine (2)
1,3-Diarachidin (2)
1,6-DINITROPYRENE (2)
1,7-di-O-phosphonohept-2-ulose (2)
1-Aminocyclopropanecarboxylic acid (2)
1-Hydroxy-3-methoxy-7-primeverosyloxyxanthone (2)
2,3-Dimercaptosuccinic acid (2)
2-(4-Chloro-3,5-dimethylphenoxy)-N-(2-phenyl-2H-benzotriazol-5-yl)-acetamide (2)
2-(Methylthio)benzothiazole (2)
2-Amino-5-chloromuconate 6-semialdehyde (2)
2-Hydroxy-2-methylbutyric acid (2)
2-amino-4-oxo-4-phosphonooxybutanoic acid (2)
2-ureidoglycine (2)

IsPrivate

False (1)

First Public Date

2017 (3)
2026 (2)
2024 (2)
2013 (2)
2022 (1)
2020 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (60)
RNA-seq of coding RNA (12)
Other (5)
Comparative genomic hybridization by array (3)
RNA-seq of non coding RNA (3)
Unknown experiment type (2)
RNAi profiling by array (2)
DNA-seq (2)
Methylation profiling by array (2)
ChIP-chip by array (1)

Release Date

2022 (333)
2021 (292)
2023 (291)
2025 (252)
2024 (244)
2020 (216)
2019 (187)
2018 (177)
2016 (142)
2017 (139)
2015 (139)
2014 (118)
2011 (89)
2013 (80)
2012 (72)
2010 (53)
2009 (49)
2026 (37)
2008 (35)
2007 (24)
2006 (22)
2005 (22)
2003 (14)
2004 (11)
2002 (6)
2001 (5)
1999 (4)
2000 (2)
1998 (1)

Lab affiliation

IRIC-Université de Montréal (3)
Research Officer|Proteomics and Small Molecule Mass Spectrometry Laboratory | Central Analytical Research Facility (CARF)| Queensland University of Technology | Address: Level 6, P Block, Gardens Point Campus, 2 George St Brisbane QLD 4000 (2)
School of Biosciences, University of Sheffield, Sheffield, UK (2)
1Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, 160 College Street, Toronto, Ontario M5S 3E1, Canada 2Department of Molecular Genetics, University of Toronto, 1 King's College Circle, Toronto, Ontario M5S 1A8, Canada Departments of Biochemistry and Biology, Boston University, 71 E. Concord St, Boston, MA 02118, USA (1)
Charles Perkins Centre, University of Sydney (1)
Department of Biochemistry, Western University, Canada (1)
Department of Cellular and Molecular Pharmacology University of California San Francisco (UCSF) San Francisco, CA 94158 USA (1)
Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia, V5A 1S6, Canada Department of Chemistry, Simon Fraser University, Burnaby, British Columbia, V5A 1S6, Canada (1)
Functional Cellular Networks Section Laboratory of Immune System Biology National Institute of Allergy and Infectious Diseases National Institutes of Health (1)
Functional Cellular Networks Section, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892-1892, USA (1)
Gene Expression Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037, USA (1)
Haynes Lab, Department of Molecular Sciences, Faculty of Science and Engineering, Macquarie University, Australia (1)
Head of the Curie Institute Mass Spectrometry Platform (1)
Helmholtz Zentrum München, Institute of Lung Biology and Disease, Member of the German Center for Lung Research (DZL), Munich, Germany (1)
Istituto di Cristallografia, Consiglio Nazionale delle Ricerche, Sede Secondaria di Catania, Via Paolo Gaifami 18, 95126 Catania, Italy (1)
King's College London, Dept. of Basic and Clinical Neuroscience, Maurice Wohl Clinical Neuroscience Institute, 5 Cutcombe Road, London, SE5 9NU (1)
Molecular Structure of Cell Signalling Laboratory, The Francis Crick Institute, United Kingdom (1)
Moredun Proteomics Facility Moredun Research Institute (1)
Program in Molecular and Integrative Physiological Sciences Harvard School of Public Health 665 Huntington Avenue Building 2, Room 221 Boston, MA 02115 USA (1)
Quantitative Biosciences Institute (QBI), University of California, San Francisco, San Francisco, CA USA J. David Gladstone Institutes, San Francisco, San Francisco, CA, USA Department of Bionengineer and Therapeutic Sciences, University of California, San Francisco, San Francisco, CA, USA (1)
Research Officer|Proteomics and Small Molecule Mass Spectrometry Laboratory | Central Analytical Research Facility (CARF)| Queensland University of Technology | Address: Level 6, P Block, Gardens Point Campus, 2 George St Brisbane QLD 4000. (1)
School of Chemistry and Molecular Biosciences, The University of Queensland, Australia (1)
SynthSys University of Edinburgh (1)
Tanz Centre for Research in Neurodegenerative Diseases, Faculty of Medicine, University of Toronto (1)
Target Discovery Institute Discovery Proteomics Facility (1)
The University of Queensland (1)
UCSF (1)
University of British Columbia (1)
University of California, Berkeley (1)
University of Illinois at Chicago (1)

Tags

xref:PubMed:38769383 (1)
xref:PubMed:37113992 (1)
xref:PubMed:32479514 (1)
xref:PubMed:21467159 (1)
xref:EuropePMC:PMC5844317 (1)
xref:EuropePMC:PMC5697891 (1)
xref:EuropePMC:PMC7986045 (1)

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Capture Hi-C identifies the chromatin interactome of colorectal cancer risk loci

Multiple regulatory elements distant to their targets on the linear genome can influence the expression of a single gene through chromatin looping. Chromosome conformation capture implemented in Hi-C allows for genome-wide agnostic characterization of chromatin contacts. However, detection of functi...

EGAS00001001085 | EGA

ena-DATASET-ICR-PTGT-05-02-2015-11:21:41:591-6 - samples

Capture Hi-C identifies the chromatin interactome of colorectal cancer risk loci.

EGAD00001001243 | EGA

Single cell Hi-C reveals cell-to-cell variability in chromosome structure

Large-scale chromosome structure and spatial nuclear arrangement have been linked to control of gene expression and DNA replication and repair. Genomic techniques based on chromosome conformation capture assess contacts for millions of loci simultaneously, but do so by averaging chromosome conformat...

ORGANISM(S): Mus musculus

2013-09-26 | E-GEOD-48262 | biostudies-arrayexpress

C. neoformans small peptides SWATH-MS proteomics

Identification and relative quantification of small proteins present in the whole cell and C18 enrichment fractions of C. neoformans measured by DDA and SWATH-MS.

ORGANISM(S): Cryptococcus neoformans

2024-02-26 | PXD022841 | Pride

CHiCAGO: Robust Detection of DNA Looping Interactions in Capture Hi-C data

Capture Hi-C (CHi-C) is a state-of-the art method for profiling chromosomal interactions involving targeted regions of interest (such as gene promoters) globally and at high resolution. Signal detection in CHi-C data involves a number of statistical challenges that are not observed when using other ...

ORGANISM(S): Mus musculus

2016-05-18 | E-GEOD-81503 | biostudies-arrayexpress

Patient Satisfaction With Heart Health Clinics in Fraser Health, Canada.

Not available

S-EPMC8205352 | biostudies-literature

Population structure of sea-type and lake-type sockeye salmon and kokanee in the Fraser River and Columbia River drainages.

Not available

S-EPMC5590831 | biostudies-literature

Detection of aberrant splicing events in RNA-seq data using FRASER.

Not available

S-EPMC7822922 | biostudies-literature

Impacts of a Rapidly Declining Mountain Snowpack on Streamflow Timing in Canada's Fraser River Basin.