Ft-icr - OmicsDI

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Unknown (358)
Proteomics (153)
Metabolomics (45)
Genomics (19)
Transcriptomics (15)
Other (2)

Organisms

Schizosaccharomyces pombe (130)
Oryza sativa Indica Group (130)
Sinorhizobium meliloti BL225C (130)
Sus scrofa domesticus (130)
Ostreococcus tauri (130)
Saccharomyces cerevisiae (130)
Staphylococcus aureus (130)
Rattus norvegicus (130)
Escherichia coli (130)
Cyanophora paradoxa (130)
Entamoeba histolytica (130)
Physcomitrium patens (130)
Methylohalobius crimeensis 10Ki (130)
Homo sapiens (130)
Lotus japonicus (130)
Shigella flexneri (130)
Ctenopharyngodon idella (130)
Danio rerio (130)
Allexis (130)
Shigella (130)
Pseudomonas putida KT2440 (130)
Mus musculus (11)
Daphnia magna (3)
Rattus rattus (2)
Escherichia coli (1)
Homo sapiens (1)
Alteromonas macleodii (1)
Aedes albopictus (1)
Streptomyces (1)
Thalassiosira pseudonana (1)

Organisms

Mus musculus (4)
Alteromonas macleodii (1)
Daphnia magna (1)
marine metagenome (1)
Arabidopsis thaliana (1)

Repository

pride (130)
MetaboLights (29)
MassIVE (24)
ENA (19)
GNPS (15)
biostudies-arrayexpress (13)
geo (2)
MetabolomicsWorkbench (1)
PeptideAtlas (1)

Tissue

Blood (59)
T cell (12)
B cell (11)
Cell culture (8)
Bone marrow (5)
Brain (5)
Blood plasma (5)
Neutrophil (5)
Peripheral blood mononuclear cell (4)
Monocyte (4)
Natural killer cell (3)
Cell suspension culture (3)
Erythrocyte (3)
Permanent cell line cell (3)
Epithelial cell (3)
Liver (3)
Platelet (3)
Colon (3)
Nectar (2)
Eosinophil (2)
Hematopoietic stem cell (2)
Cytotoxic T cell (2)
Macrophage (2)
Dendritic cell (2)
Leaf (2)
Lung (2)
Cultured cells (1)
Nectary (1)
Brain macroglial cell (1)
Blood vessel (1)

Disease

Disease free (61)
Malignant neoplasm of ovary (2)
Breast cancer (2)
Normal (1)
Hidradenitis suppurativa (1)
Hepatitis B (1)
Generalized convulsive epilepsy (1)
Crohn's colitis (1)
Septicemia (1)
Hepatocellular carcinoma (1)
Non-small cell lung carcinoma (1)
Brain glioblastoma multiforme (1)
Chikungunya (1)
Cardiovascular system disease (1)
Brain cancer (1)
Alzheimer's disease (1)
Malaria (1)
Glioblastoma (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (131)
Top-down proteomics (67)
Shotgun proteomics (37)
Mass spectrometry (27)
Bottom-up proteomics (12)
Affinity purification coupled with mass spectrometry proteomics (7)
Chemical cross-linking coupled with mass spectrometry proteomics (7)
Gel-based experiment (5)
Mass spectrometry imaging (3)
Data-dependent acquisition (3)
Mass spectrometry assay (2)
Affinity proteomics (2)
NMR spectroscopy (1)
ESI (1)
Immunopeptidomics (1)
MSE (1)
HDMSE (1)

Instrument Platform

SolariX (7)
Thermo Finnigan LTQ-FT-ICR (5)
7T solariX FT-ICR (4)
Q Exactive HF (4)
Q Exactive (3)
LTQ FT Ultra (2)
21T FT-ICR MS (2)
Orbitrap IQ-X (Thermo Scientific Instrument Model) (2)
Agilent 7890A GC with 5975C inert XL MSD (2)
Varian NMR (2)
Solarix FT-ICR-MS 12T (Bruker) (2)
Bruker Daltonics instrument model (2)
21 Tesla FT-ICR (2)
NHMFL 21T FT-ICR-MS (2)
GeneTitan MultiChannel System (1)
GeneChip Clariom S mouse array cartridge and Affymetrix GeneTitan MultiChannel System (1)
GeneChip Pico Kit (Affymetrix/ThermoFisher) (1)
ReliaPrep RNA Miniprep System (Promega) (1)
Adipocyte Progenitor Isolation Kit (Miltenyi Biotec) (1)
N/A (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 4000 (1)
LTQ FT ICR (1)
6520A Quadrupole Time-of-Flight LC/MS (1)
FT ICR (1)
ThermoFisher LTQ FT-ICR Ultra (1)
ThermoFisher LTQ Linear Ion Trap (1)
Apex Q (1)
NHMFL FT-ICR (1)
6520 Quadrupole Time-of-Flight LC/MS (1)

Publication Date

2022 (77)
2024 (16)
2018 (12)
2023 (11)
2015 (11)
2025 (10)
2016 (10)
2019 (9)
2026 (8)
2021 (8)
2020 (8)
2011 (6)
2017 (6)
2014 (5)
2010 (3)
2008 (2)
2013 (2)
2004 (1)

CHEBI ID

CHEBI:27897 (11)
CHEBI:29016 (10)
CHEBI:17596 (10)
CHEBI:16811 (9)
CHEBI:15741 (9)
CHEBI:28044 (9)
CHEBI:16335 (9)
CHEBI:26271 (8)
CHEBI:18237 (8)
CHEBI:22660 (8)
CHEBI:28300 (8)
CHEBI:18257 (8)
CHEBI:16750 (8)
CHEBI:17015 (8)
CHEBI:17509 (8)
CHEBI:17750 (8)
CHEBI:30769 (8)
CHEBI:16457 (7)
CHEBI:6650 (7)
CHEBI:16235 (7)
CHEBI:7916 (7)
CHEBI:16027 (7)
CHEBI:28681 (6)
CHEBI:44111 (6)
CHEBI:12962 (6)
CHEBI:17202 (6)
CHEBI:16040 (6)
CHEBI:16695 (6)
CHEBI:16708 (6)
CHEBI:24898 (6)

Metabolite Name

Aspartic acid (5)
Tryptophan (5)
Adenine (5)
Methionine (5)
Succinic acid (5)
Proline (4)
Inosine (4)
Guanosine (4)
Xanthine (4)
Phenylalanine (4)
Glutamine (4)
Ornithine (4)
Citric acid (4)
Chitotriose (3)
Syringic acid (3)
Pantothenic acid (3)
Glutamic acid (3)
Chitobiose (3)
2,3-dihydroxypropane-1-sulfonate (3)
Leucine (3)
Xanthosine (3)
Taurine (3)
Serine (3)
Guanine (3)
Arginine (3)
Isoleucine (3)
Leucine (3)
4-hydroxybenzoic acid (3)
Malic acid (3)
NAD (3)

First Public Date

2025 (5)
2026 (4)
2013 (4)
2023 (1)
2022 (1)
2021 (1)
2018 (1)
2016 (1)
2014 (1)

Modification

6.020129 (1)
71.037114 (1)
N6 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
Not available (1)

Study type

Transcription profiling by array (7)
Other (4)
MeDIP-seq (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (35)
2020 (34)
2023 (33)
2021 (32)
2024 (25)
2025 (24)
2017 (22)
2019 (21)
2013 (17)
2011 (16)
2018 (16)
2015 (15)
2010 (13)
2016 (12)
2014 (11)
2009 (10)
2008 (9)
2012 (9)
2026 (6)
2007 (5)
2006 (3)
2005 (2)
2004 (1)

Lab affiliation

Departments of Chemical and Biological Engineering, Chemistry, and Molecular Biosciences, the Chemistry of Life Processes Institute, and the Proteomics Center of Excellence, Northwestern University, Evanston, Illinois 60208, United States (60)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (3)
Laboratory of Structural Biology and Cell Signaling Institute of Microbiology of the Czech Acad Sci Prumyslova 595 252 50 Vestec Czech Republic (3)
Institute of Microbiology, The Czech Academy of Sciences (2)
Institute of Microbiology - BioCeV, Academy of Sciences of the Czech Republic (2)
The University of NSW, Australia (1)
SMBP (1)
CEA Grenoble, Commissariat à l'Energie Atomique et aux Energies Alternatives (1)
Iowa State University - Department of Biochemistry Biophysics and Molecular Biology (1)
NTU SBS School of Biological Science SBS-04n-08, Singapore 637551 (1)
University of Maryland School of Pharmacy (1)
Associate Professor Director of Proteomics and Mass Spectrometry Facility School of Biological Sciences Nanyang Technological University 60 Nanyang Drive, Singapore 637551 Tel: (65) 6514-1006; Fax: (65) 6791-3856 Email: sksze@ntu.edu.sg Web: http://proteomics.sbs.ntu.edu.sg/ (1)
Department of Developmental and Molecular Biology, Albert Einstein College of Medicine, Bronx, NY 10461, USA. (1)
Sahlgrenska Academy, University of Gothenburg, Sweden (1)
Institute of Microbiology, University Greifswald (1)
Institute of Microbiology of the CAS, Czech Republic (1)
Brainstorm Brain Cancer Research, Brain and Mind Centre, University of Sydney, NSW, Australia School of Life and Environmental Science, University of Sydney, New South Wales, Australia (1)
Department of Chemistry, University of Michigan, Ann Arbor, MI, United States (1)
Lu Qingtao, Ph.D. Photosynthesis Research Center, Room 230 Institute of Botany, CAS Haidian Xiangshan Nanxincun 20# Beijing. 100093 Phone, +86-10-62836254 Email, lu_qingtao@ibcas.ac.cn (1)
Professor, Medicine and Cellular and Molecular Medicine Founding Director, Institute for Network Medicine University of California San Diego (1)
Institute of Microbiology of the Czech Academy of Sciences, Vestec, Czech Republic (1)
University of Washington - Department of Genome Sciences (1)
Department of Biochemistry Biophysics and Molecular Biology, Iowa State University, Ames, IA, USA (1)
Departments of Medical Oncology and Clinical Research, Cancer Institute(WIA), 38 Sardar Patel Road Guindy, Chennai:600036 (1)
Department of Molecular and Cellular Biochemistry, University of Kentucky, Lexington, KY 40536, USA (1)
Department of Physiology, the University of Auckland (1)
Department of Marine, Earth and Atmospheric Sciences, North Carolina State University, Raleigh, NC 27695 (1)
Center for Mass Spectrometry and Optical Spectroscopy (CeMOS), Mannheim University of Applied Sciences, Paul-Wittsack Str. 10, 68163 Mannheim, Germany (1)
Professor, Departments of Orthopaedic Surgery, Radiology, and Bioengineering Vice Chair of Research and Innovation (Orthopaedic Surgery) UC San Diego 9500 Gilman Drive (0863) La Jolla, CA 92093-0863 USA (1)
Department of Biochemistry and Microbiology, Ghent Univers (1)

Tags

xref:PubMed:21875964 (1)
xref:PubMed:30116038 (1)
xref:PubMed:21282433 (1)
xref:PubMed:24793022 (1)
xref:PubMed:21321075 (1)
xref:PubMed:21764918 (1)

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Ultra-High Mass Resolving Power, Mass Accuracy, and Dynamic Range MALDI Mass Spectrometry Imaging by 21-T FT-ICR MS

Detailed characterization of complex biological surfaces by matrix-assisted laser desorption/ionization (MALDI) mass spectrometry imaging (MSI) requires instrumentation that is capable of high mass resolving power, mass accuracy and dynamic range. Fourier transform ion cyclotron resonance mass sp...

2022-01-28 | MTBLS3154 | MetaboLights

Infrared matrix-assisted laser desorption electrospray ionization (IR-MALDESI) imaging source coupled to a FT-ICR mass spectrometer.

Not available

S-EPMC3689149 | biostudies-literature

Nontargeted and targeted metabolomics measurements of abiotic stress responses in three-week-old Arabidopsis thaliana plants' rosette leaf tissue

Nontargeted and targeted metabolomics measurements of abiotic stress responses in three-week-old Arabidopsis thaliana plants' rosette leaf tissue for Col-0 wild type plants and double/triple knockout mutants of aquaporins (pip2;1 pip2;2 and pip2;1 pip2;2 pip2;4) treated with drought, heat at differe...

2017-07-17 | MTBLS355 | MetaboLights

Wolbachia modulation of lipid metabolism in Aedes albopictus mosquito cells

Certain strains of the intracellular endosymbiont Wolbachia can strongly inhibit or block the transmission of viruses such as dengue by Aedes mosquitoes, and the mechanisms responsible are still not well understood. Direct infusion and liquid chromatography FT-ICR mass spectrometry based lipidomicse...

MTBLS210 | MetaboLights

Assessing drug and metabolite detection in liver tissue by UV-MALDI and IR-MALDESI mass spectrometry imaging coupled to FT-ICR MS.

Not available

S-EPMC4456684 | biostudies-literature

Applications and advancements of FT-ICR-MS for interactome studies.

Not available

S-EPMC8184889 | biostudies-literature

Construction of Human Proteoform Families from 21 Tesla FT-ICR Mass Spectrometry Top-Down Proteomic Data

MCF-7 cell lysate was fractionated using a 10% GELFrEE cartridge. Each fraction was analyzed by 21 T FT-ICR at the National High Magnetic Field Laboratory.

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2020-08-19 | MSV000085978 | MassIVE

Large-Scale Interlaboratory DI-FT-ICR MS Comparability Study Employing Various Systems.

Not available

S-EPMC9732881 | biostudies-literature

Harmonization of FT-ICR-MS Instruments for Interoperable Multi-Laboratory Comprehensive Compositional Profiling.

Not available

S-EPMC12019771 | biostudies-literature

Autophaser: an algorithm for automated generation of absorption mode spectra for FT-ICR MS.

Not available

S-EPMC3712280 | biostudies-literature