Sort   by:  
 Page size 
TranscriptomicsResponse of ethanologenic E coli strains LY180 and EMFR9 to furfural
The data explore the transcriptional response of strain LY180 and the furfural-resistant derivative EMFR9 to 0.5 g/L furfural LY180 and EMFR9 and differences in their expression profiles are described in Miller, E. N., L. R. Jarboe, L. P. Yomano, S. W. York, K. T. Shanmugam, and L. O. Ingram. 2009. ...
ORGANISM(S): Escherichia coli 
2010-05-06 | E-GEOD-17786 | biostudies-arrayexpress
TranscriptomicsEffect of furfural on the Clostridium beijerinckii NCIMB 8052 transcriptome
Furfural is the prevalent microbial inhibitor generated during pretreatment and hydrolysis of lignocellulosic biomass to monomeric sugars, but the molecular response of Clostridium beijerinckii NCIMB 8052 to this compound is unknown. To discern the effect of furfural on C. beijerinckii and to gain ...
ORGANISM(S): Clostridium beijerinckii NCIMB 8052 
2012-12-06 | E-GEOD-42597 | biostudies-arrayexpress
TranscriptomicsLate lag phase Inhibitor tolerant NRRL Y-50049 vs WT Y-12632 against furfural and HMF challenge
Adapted tolerant yeast strain Y-50049 is able to in situ detoxify furfural and HMF while the wild type control Y-12632 repressed to loss function under challenges of 20 mM each of furfural and HMF A time course study during the lag phase with cells harvested at 18, 24, 28, and 42 h after 20 mM furfu...
ORGANISM(S): Saccharomyces cerevisiae 
2015-04-16 | E-GEOD-50492 | biostudies-arrayexpress
TranscriptomicsTranscriptome Profiling of Zymomonas mobilis under furfural stress
Investigation of the expression profiling of the ethanologenic Zymomonas mobilis in response to furfural stress. A six chip study using total RNA recovered from three separate wild-type cultures of Zymomonas mobilis ATCC31821 and three separate cultures of a triple treated with 1.0 g/l furfural. Eac...
ORGANISM(S): Zymomonas mobilis subsp. mobilis ZM4 
2012-05-08 | E-GEOD-37848 | biostudies-arrayexpress
TranscriptomicsRNA expression for ethanologenic E coli strains LY180 and LY180 del yqhC in the absence and presence of furfural
The data explore the transcription of strain LY180 and the yqhC deletion mutant LY180 del yqhC without and with 0.5 g/L furfural. LY180 and LY180 del yqhC are described in Turner, PC, EN Miller, LR Jarboe, P Pharkya, KT Shanmugam, and LO Ingram. 2009. Escherichia coli YqhC regulates transcription of...
ORGANISM(S): Escherichia coli 
2010-08-24 | E-GEOD-17788 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of S. cerevisiae response to high furfural is based on NADPH-dependent reduction by at least two oxireductases
Resistance of Saccharomyces cerevisiae to high furfural concentration is based on NADPH-dependent reduction by at least two oxireductases. Biofuels derived from lignocellulosic biomass hold promises for a sustainable fuel economy, but several problems hamper their economical feasibility. One importa...
ORGANISM(S): Saccharomyces cerevisiae 
2009-10-03 | E-GEOD-18314 | biostudies-arrayexpress
TranscriptomicsTranscriptome analysis of Corynebacterium glutamicum in response to furfural presence
To understrand the altered global gene expression levels in C. glutamicum wild type in presence of furfural, transcriptome profiling was performed. Transcriptome profiles of the wild type grown in CgXII medium without furfural and with furfural stresses (each 6.5 mM, 13 mM, and 20 mM) were compared ...
ORGANISM(S): Corynebacterium glutamicum ATCC 13032 
2015-01-01 | E-GEOD-55516 | biostudies-arrayexpress
TranscriptomicsSaccharomyces cerevisiae stress responses to HMF and furfural (xylose and glucose) Oct
HMF and furfural were pulse added to xylose-utilizing Saccharomyces cerevisiae during either the glucose consumption phase or the xylose consumption phase. Transcriptome samples were collected before and one hour after pulsing of inhibitors. Three biological replicates from each conditions analyzed.
ORGANISM(S): Saccharomyces cerevisiae 
2013-11-25 | E-GEOD-50182 | biostudies-arrayexpress
ProteomicsMolecular mechanism of Engineered Zymomonas mobilis response to furfural and acetic acid stress
This study investigated the responses of ZM532 and wild-type ZM4 to acetic acid and furfural using genomics, transcriptomics and label free quantitative proteome. By Sanger sequencing technology we re-verified of previously identified 19 mutations in ZM532, but we found a total of 23 single nucleoti...
ORGANISM(S): Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 
2023-05-10 | PXD030417 | Pride
Proteome Zymomonas mobilis Lignocellulosic biomass Acetic acid Furfural Rna-seq 
TranscriptomicsRNA expression for ethanologenic Escherichia coli strain LY180 in the absence and presence of 15 mM furfural for 15 min
The data explore the transcriptional response of strain LY180 to 15 mM furfural under anaerobic fermentation conditions. The expression differences of oxidoreductase in LY180 are described. Total RNA was prepared from cultures of LY180 immediately before and 15 min after addition of furfural to 15 m...
ORGANISM(S): Escherichia coli 
2012-01-10 | E-GEOD-34956 | biostudies-arrayexpress
Sort   by:  
 Page size