G4 - OmicsDI

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Unknown (2979)
Transcriptomics (1295)
Genomics (673)
Proteomics (63)
Other (44)
Clinical (7)
Metabolomics (7)
Methylation profiling (5)
Models (1)

Organisms

Homo sapiens (888)
Mus musculus (505)
Arabidopsis thaliana (39)
Rattus norvegicus (14)
Agrobacterium tumefaciens (8)
Gallus gallus (8)
Drosophila melanogaster (8)
Oryza sativa (8)
Danio rerio (6)
Bos taurus (5)
Vitis vinifera (4)
Sus scrofa (4)
Papio anubis (3)
Solanum lycopersicum (3)
Canis lupus familiaris (3)
Solanum chacoense (2)
Macaca mulatta (2)
Xenopus laevis (2)
Medicago truncatula (2)
Citrus sinensis (2)
Solanum tuberosum (2)
Pseudomonas aeruginosa (2)
Blastomyces dermatitidis ATCC 26199 (1)
Saccharum sp. (1)
Lates calcarifer (1)
Petunia x hybrida (1)
Pinus radiata (1)
Bradyrhizobium japonicum (1)
Ambystoma mexicanum (1)
Panicum virgatum (1)

Organisms

Homo sapiens (177)
Mus musculus (69)
root metagenome (6)
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hot springs metagenome (5)
soil metagenome (5)
Oryza sativa (4)
Bombyx mori (4)
Escherichia coli (4)
synthetic construct (4)
Trypanosoma brucei (3)
cold seep metagenome (3)
Mycobacterium tuberculosis (3)
Arabidopsis thaliana (3)
Rattus norvegicus (3)
Plasmodium falciparum (3)
Schizosaccharomyces pombe 927 (2)
Capreolus pygargus (2)
Neurospora crassa (2)
Magallana gigas (2)
Schizosaccharomyces pombe (2)
Drosophila melanogaster (2)
Caenorhabditis elegans (2)
marine metagenome (2)
microbial mat metagenome (2)
Gallus gallus (2)
Oceaniglobus trochenteri (1)
Paenibacillus camerounensis (1)
Nocardia rosealba (1)
Stenotrophomonas sp. G4 (1)

Repository

biostudies-arrayexpress (1254)
ENA (477)
geo (279)
pride (45)
EGA (10)
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jPOST (2)
ExpressionAtlas (1)
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GNPS (1)

Tissue

Cell culture (15)
Permanent cell line cell (4)
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T cell (3)
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Breast (2)
Primary cell (2)
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Blood (1)

Disease

Breast cancer (6)
Neuroblastoma (3)
High grade glioblastoma (2)
Colorectal Neoplasms (2)
Malignant testicular germ cell tumor (1)
Wounded; tumour (1)
Primary medulloblastoma (1)
Papillary Carcinoma (1)
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"hepatocellular adenoma" (1)
Healthy (1)
Bladder tumour (1)
Non-diseased (1)
Giant cell glioblastoma (1)
Bladder cancer (1)
NF1 atypical neurofibroma (1)
Pilocytic astrocytoma (1)
Serous ovarian cancer (1)
Temporal lobe epilepsy (1)
Obesity (1)
Acute promyelocytic leukemia (1)
Glioblastoma (1)
None (1)
Normal (1)
Chemotherapy induced diarrhoea that is resistant to common treatment including loperamide in patients with colorectal carcinoma (1)
Neoplasm Metastasis (1)
Neoplasms benign, malignant and unspecified (incl cysts and polyps) (1)
Colonic Neoplasms (1)
Metastatic colorectal cancer (1)
Colorectal adenocarcinoma (1)

Technology Type

Mass Spectrometry (45)
Shotgun proteomics (15)
Affinity purification coupled with mass spectrometry proteomics (13)
Bottom-up proteomics (11)
Gel-based experiment (8)
Data-dependent acquisition (7)
Mass spectrometry (6)
Data-independent acquisition (4)
Affinity proteomics (2)
Immunopeptidomics (1)
SWATH MS (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (21)
NextSeq 500 (21)
Illumina NovaSeq 6000 (13)
Illumina HiSeq 2500 (10)
Illumina HiSeq 4000 (10)
Illumina HiSeq 1500 (7)
Illumina Genome Analyzer IIx (4)
IScan (2)
Illumina BeadArray reader (2)
ScanArray 4000 [PerkinElmer] (2)
Illumina MiSeq (2)
NextSeq 550 (2)
Cellranger (1)
FACS BD Aria II & III (1)
Genomics Core Shared Resources at Augusta University (RRID: SCR_026483) (1)
RNeasy Mini Kit (Qiagen) (1)
GentleMACS Octo Dissociator with Heaters (Miltenyi Biotec, Cat. No. 130-096-427) together with the Human Tumor Dissociation Kit (Miltenyi Biotec, Cat. No. 130-095-929), (1)
G2565BA Microarray Scanner (1)
10X Genomics Chromium (1)
Ion Proton sequencer (1)
QIAcube (Qiagen) (1)
EpMotion 5075 automated pipetting system (Eppendorf, Hamburg, Germany) (1)
Scanning of was performed on an Axon 4000B scanner (1)
Axon GenePix 4000A scanning hardware (1)
ScanArray scanning hardware (1)
AB SOLiD 4 System (1)
ScanArray 5000 [PerkinElmer] (1)
G2565AA DNA microarray scanner [Agilent] (1)
GenePix 4000B [Axon Instruments] (1)
Illumina Genome Analyzer II (1)

Publication Date

2012 (170)
2013 (155)
2014 (153)
2010 (142)
2015 (137)
2016 (100)
2011 (98)
2008 (91)
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2009 (60)
2024 (58)
2026 (55)
2021 (48)
2020 (42)
2019 (39)
2022 (34)
2023 (30)
2017 (27)
2007 (26)
2018 (23)
2006 (11)
2005 (11)
2004 (4)
2002 (1)

CHEBI ID

CHEBI:24298 (2)
CHEBI:18107 (2)
CHEBI:27897 (2)
CHEBI:58279 (1)
CHEBI:61063 (1)
CHEBI:133084 (1)
CHEBI:85460 (1)
CHEBI:139535 (1)
CHEBI:33509 (1)
CHEBI:75499 (1)
CHEBI:28927 (1)
CHEBI:38382 (1)
CHEBI:37432 (1)
CHEBI:7637 (1)
CHEBI:28613 (1)
CHEBI:46968 (1)
CHEBI:134206 (1)
CHEBI:15427 (1)
CHEBI:89633 (1)
CHEBI:70997 (1)
CHEBI:86031 (1)
CHEBI:53678 (1)
CHEBI:139534 (1)
CHEBI:33277 (1)
CHEBI:88728 (1)
CHEBI:139536 (1)
CHEBI:19688 (1)
CHEBI:137056 (1)
CHEBI:28284 (1)
CHEBI:88108 (1)

Metabolite Name

Dihydroxyphenyllactate (1)
Carboxyethylarginine (1)
Chlorotyrosine (1)
5-Hydroxytryptophan isomer (1)
N-Acetylornithine isomer (1)
Dihydroxyoxocholanate (1)
Tetrahydroaldosterone glucuronide (1)
Keto-decanoylcarnitine (1)
Decanoyl carnitine (1)
Nonanoyl carnitine (1)
Propanoylcarnitine (1)
Hydroxyhepatonyl glycine (1)
Glucuronate or isomer (1)
Sorbitol or isomer (1)
Arabinonate (1)
Rhamnose or isomer (1)
Xylitol or isomer (1)
Methoxyhydroxyphenylethyleneglycol sulfate (1)
Dihydroxy phenyl acetic acid sulfate or isomer (1)
Hydroxybutyric acid sulfate (1)
Oxobutanoate (1)
Dimethyladenosine (1)
Methyladenosine (1)
Methyllysine (1)
Hexacosanoyl carnitine (1)
13'-carboxy-alpha-tocotrienol (1)
13'-carboxy-gama-tocotrienol (1)
Tetradecanoyl carnitine (1)
(5Z,8Z,11Z,14Z)-Icosatetraenoic acid; Arachidonate; Arachidonic acid; cis-5,8,11,14-Eicosatetraenoic acid (1)
Leukotriene A4; LTA4; (7E,9E,11Z,14Z)-(5S,6S)-5,6-Epoxyeicosa-7,9,11,14-tetraenoic acid; (7E,9E,11Z,14Z)-(5S,6S)-5,6-Epoxyeicosa-7,9,11,14-tetraenoate; (7E,9E,11Z,14Z)-(5S,6S)-5,6-Epoxyicosa-7,9,11,14-tetraenoate; (5S,6S,7E,9E,11Z,14Z)-5,6-epoxyicosa-7,9,11,14-tetraenoate (1)

First Public Date

2025 (96)
2024 (74)
2026 (67)
2021 (42)
2023 (32)
2020 (32)
2022 (28)
2018 (22)
2014 (20)
2019 (18)
2015 (14)
2017 (13)
2016 (9)
2013 (9)
2012 (1)

Modelling Approach

Ordinary differential equation model (1)

Study status

Completed (3)
Recruiting (2)
Terminated (1)
Not provided (1)

Lab affiliation

Head of the Curie Institute Mass Spectrometry Platform (3)
Institute of Pharmacology and Structural Biology, CNRS, Toulouse, France (2)
INSERM ACTION U1218, Institut Bergonié, 33076 Bordeaux Cedex, FRANCE (1)
Key Laboratory of Quantitative Synthetic Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China (1)
Department of Molecular Medicine, University of Padua, via A. Gabelli 63, 35121 Padua, Italy (1)
Department of Biology, East Carolina University (1)
Shankar Balasubramanian Lab University of Cambridge (1)
Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge, UK. Cancer Research UK Cambridge Institute, Li Ka Shing Centre, University of Cambridge, Cambridge, UK. School of Clinical Medicine, University of Cambridge, Cambridge, UK. (1)
State Key Laboratory of Natural Medicines, Basic Medical Research Innovation Center for Anti-Cancer Drugs (Ministry of Education), and Jiangsu Key Laboratory of Bioactive Natural Product Research, China Pharmaceutical University (1)
Department of Medical Biochemistry and Biophysics (1)
Department of Medical Biochemistry and Biophysics, Umeå University, Umeå, Sweden (1)
Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB21EW, United Kingdom (1)
Department of Analytical Chemistry, University of Vienna, Austria (1)
The Weizmann Institute of Science (1)
University of Arkansas for Medical Sciences, Department of Biochemistry and Molecular Biology (1)
Institute of Chemistry, Chinese Academy of Sciences (1)
Department of Microbiology, Sungkyunkwan University School of Medicine, Suwon 16419, Republic of Korea (1)
Associate Professor, Microbiology, Immunology, and Cancer Biology Carter Immunology Center University of Pittsburgh (1)
Oncode Institute, Hubrecht Institute-KNAW & University Medical Center Utrecht, Uppsalalaan 8, Utrecht, 3584 CT, The Netherlands (1)
Department of Chemistry, University of California Riverside, Riverside, CA 92521-0403. (1)
Departments of Cancer Genetics and Epigenetics Beckman Research Institute, City of Hope, Duarte, CA 91007, USA (1)
Department of Plants and Crops, Ghent University, Belgium (1)
University of Arkansas for Medical Sciences (1)
Università degli studi di Napoli Federico II Dipartimento delle Scienze Chimiche (1)
Università degli studi di Napoli Federico II - Dipartimento di Chimica (1)
Department of Peptide-based Immunotherapy, Institute of Immunology, University and University Hospital Tübingen, Tübingen, BW, Germany (1)
Department of Chemical Sciences, University of Naples “Federico II”, Via Cintia, 21 – 80126 – Naples and CEINGE Advanced Biotechnologies s.c.a r.l. “Franco Salvatore”, Via Gaetano Salvatore, 486 – 80145 - Naples (1)
Department of Chemical Sciences, University of Naples “Federico II”, Via Cintia, 21 – 80126 – Naples and CEINGE Advanced Biotechnologies s.c.a r.l. “Franco Salvatore”, Via Gaetano Salvatore, 486 – 80145 - Naples (1)
Joslin Diabetes Center, Harvard Medical School (1)
School of Pharmaceutical Science, Sun Yat-Sen University, China (1)

Keyword

SOMATULINE AUTOGEL 120 MG INJ SOL 1X0.5ML/120MG (1)
KISIMA-01 (1)
ATP128 (1)
BI 754091 (Ezabenlimab) (1)
MMRp (1)
VSV-GP128 (1)
Therapeutic viral vaccine (1)
Heterologous prime-boost (1)
Maintenance setting (1)
Tafinlar (1)
Anaplastic thyroid cancer (ATC) (1)
Biliary tract cancer (BTC) (1)
Low grade (WHO G1/G2) glioma (LGG) (1)
High grade (WHO G3/G4) glioma (HGG) (1)
Non-seminomatous germ cell tumors (NSGCT)/non-germinomatous germ cell tumors (NGGCT) (1)
Adenocarcinoma of the small intestine (ASI) (1)
Hairy cell leukemia (HCL) (1)
Programmed Cell Death 1 Receptor (1)
Gastrointestinal stromal tumor (GIST) (1)
BRAF V600E mutation (1)
PT1 (1)
Polypectomy (1)
Neoadjuvant Therapy (1)
Multiple myeloma (MM) (1)
Safety (1)
Magrolimab (1)
Stivarga (1)
Dabrafenib (1)
Colorectal neoplasm (1)
Efficacy (1)

IsPrivate

False (1)

Classification

bacteria (13)
protozoa (6)
fungi (1)
viruses (1)

Study type

Transcription profiling by array (815)
RNA-seq of coding RNA (135)
ChIP-seq (75)
Methylation profiling by array (42)
Comparative genomic hybridization by array (36)
Unknown experiment type (21)
ChIP-chip by tiling array (16)
RNA-seq of non coding RNA (13)
Other (12)
ChIP-chip by array (11)
Methylation profiling by high throughput sequencing (10)
RNA-seq of coding RNA from single cells (8)
Transcription profiling by SAGE (6)
MicroRNA profiling by array (6)
Human - High-throughput sequencing (5)
DNA-seq (5)
Transcription profiling by RT-PCR (4)
Cell line - High-throughput sequencing (3)
RNAi profiling by array (3)
Genotyping by array (3)
RNA-seq of total RNA (3)
High-throughput sequencing (2)
Bisulfite-seq (2)
Proteomic profiling by array (2)
Cell line - Single-cell sequencing (1)
MNase-seq (1)
Differential (1)
Animal - One-color microarray (1)
One-color microarray (1)
Human - Single-cell sequencing (1)

Release Date

2022 (404)
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2020 (285)
2014 (227)
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2011 (128)
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2009 (79)
2026 (42)
2007 (34)
2006 (18)
2005 (17)
2004 (10)
2003 (6)
2002 (5)
2001 (5)
2000 (4)
1998 (4)
1999 (1)
1997 (1)

Location

Italy (3)
United States (3)
Germany (2)
Spain (2)
Belgium (2)
France (2)
Norway (1)
North Korea (1)
Asia except Japan (1)
Europe (1)
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China (1)
South Korea (1)
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BLM-G4 pulldown IP-MS in human colon cancer HT-29 cells

the experiment uses biotin-labelled BLM-G4 to incubate with HT-29 cell lysates, and uses streptavidin agarose beads to pulldown BLM-G4-binding proteins. Utilize LC-MS/MS to annotate and quantify the proteins pulled down by BLM-G4.

ORGANISM(S): Homo sapiens (Human)

2026-06-08 | PXD075345 | Pride

Geobacillus sp. G4 strain:G4

Geobacillus sp. G4 strain:G4 Genome sequencing

PRJNA1124973 | ENA

Stenotrophomonas sp. G4 strain:G4

Stenotrophomonas sp. G4 Genome sequencing and assembly

PRJNA486733 | ENA

Identification of human proteins interacting with locked G4 structures

G4 are noncanonical secondary structures consist in stacked tetrads of Hoogsteen hydrogen-bonded guanines bases. An essential feature of G-quadruplexes is their intrinsic polymorphic nature. Indeed, depending on the length and the composition of the sequence, as well as the environmental conditions ...

ORGANISM(S): Homo sapiens (Human)

2021-07-16 | PXD021003 | Pride

G-quadruplex Rna pol ii pausing Nanolc-ms/ms Constrained g4 structures Proteins

Cellulosimicrobium sp. G4 BAM 1002 strain:iChip isolate G4 | isolate:iChip isolate G4

Cellulosimicrobium sp. G4 BAM 1002 strain:iChip isolate G4 | isolate:iChip isolate G4 Genome sequencing

PRJNA1219378 | ENA

Gordonia sp. G4 strain:G4

Gordonia sp. G4 strain:G4 Genome sequencing

PRJNA1466806 | ENA

Transcription profiling of human cholinergic SN56.B5.G4 cells treated with beta-amyloid or hydrogen peroxide

Effect of beta-Amyloid and oxidative stress on gene expression in cholinergic SN56.B5.G4-cells

ORGANISM(S): Mus musculus