Gastric cancer line

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Unknown (1288)
Transcriptomics (424)
Genomics (294)
Proteomics (62)
Clinical (18)
Metabolomics (14)
Methylation profiling (5)
Other (3)
Multiomics (1)

Organisms

Homo sapiens (485)
Mus musculus (48)
Helicobacter pylori (6)
Rattus norvegicus (4)
Helicobacter pylori 26695 (1)
Oncorhynchus mykiss (1)
Gallus gallus (1)
Sus scrofa (1)
synthetic construct (1)
Homo sapiens x Mus musculus hybrid cell line (1)
Arabidopsis thaliana (1)

Organisms

Homo sapiens (176)
Mus musculus (11)
Homo (3)
Helicobacter pylori (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (356)
ENA (234)
geo (126)
pride (34)
MetaboLights (14)
EGA (12)
jPOST (11)
iProX (6)
MassIVE (5)
ExpressionAtlas (4)
LINCS (2)

Tissue

Cell culture (18)
Stomach (9)
Epithelial cell (7)
Thyroid gland (2)
Adrenal gland (1)
Bile duct (1)
Bone (1)
Brain (1)
Breast (1)
Connective tissue (1)
Esophagus (1)
Gall bladder (1)
Hematopoietic system (1)
Kidney (1)
Large intestine (1)
Liver (1)
Lung (1)
Mucosa (1)
Musculature (1)
Ovary (1)
Pancreas (1)
Peripheral nervous system (1)
Placenta (1)
Prostate gland (1)
Skin (1)
Testis (1)
Urinary bladder (1)
Uterine cervix (1)
Uterus (1)
Vulva (1)

Disease

Gastric adenocarcinoma (6)
Invasive ductal carcinoma (3)
Acute myeloid leukemia (2)
Adrenal gland neuroblastoma (2)
Anaplastic astrocytoma (2)
Askin tumor (2)
B-cell acute lymphoblastic leukemia (2)
Bladder carcinoma (2)
Bladder transitional cell carcinoma (2)
Breast adenocarcinoma (2)
Breast carcinoma (2)
Burkitts lymphoma (2)
Cervical squamous cell carcinoma (2)
Cholangiocarcinoma (2)
Chondrosarcoma (2)
Chronic myelogenous leukemia (2)
Clear cell renal carcinoma (2)
Colorectal carcinoma (2)
Cutaneous T-cell lymphoma (2)
Diffuse large B-cell lymphoma (2)
Esophageal adenocarcinoma (2)
Esophageal squamous cell carcinoma (2)
Ewing sarcoma (2)
Fibrosarcoma (2)
Follicular thyroid carcinoma (2)
Head and neck squamous cell carcinoma (2)
Hepatocellular carcinoma (2)
Hodgkins lymphoma (2)
Invasive lobular carcinoma (2)
Large cell lung carcinoma (2)

Technology Type

Mass Spectrometry (34)
Shotgun proteomics (22)
Mass spectrometry (9)
Gel-based experiment (5)
Bottom-up proteomics (4)
Mass spectrometry assay (3)
Data-dependent acquisition (3)
SWATH MS (3)
Illumina HiSeq 2000 (2)
Fluorescence imaging (2)
Fluorescence intensity (2)
NMR spectroscopy (2)
Data-independent acquisition (2)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HiSeq 2000, unknown (1)
Illumina 2.5M, Illumina HiSeq 2000 (1)
Affinity purification coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (8)
NextSeq 500 (6)
Illumina HiSeq 2000 (5)
Illumina HiSeq 2500 (4)
Dr. Tom Multi-omics Data Mining System (1)
Animal Experiment Facility (1)
SPF Animal Room (1)
PCR Thermocycler, Fragment Analyzer (1)
Centrifuge, Nucleic Acid Quantification Instrument (1)
Biosafety Cabinet, Liquid Nitrogen Tank, -80°C Freezer (1)
GeneChip™ Scanner 3000 7G (1)
Affymetrix Fluidics Station 450 (1)
Messenger RNA was purified from total RNA using poly-T oligo-attached magnetic beads. After fragmentation, the first strand cDNA was synthesized using random hexamer primers followed by the second strand cDNA synthesis. The library was ready after end repair, A-tailing, adapter ligation, size selection, amplification, and purification. The library was checked with Qubit and real-time PCR for quantification and bioanalyzer for size distribution detection. (1)
Agilent Bioanalyzer 2100 (Agilent Technologies, USA). (1)
Not Appliciable (1)
Qiagen (1)
TruSeq Stranded mRNA Sample Preparation Kit (Illumina) (1)
Illumina HiScanSQ (1)
Illumina Genome Analyzer IIx (1)
Illumina NovaSeq X (1)
DNBSEQ-T7 (1)
HiSeq X Ten (1)
Illumina MiSeq (1)
Illumina HiSeq 4000 (1)
LTQ (1)
LTQ Orbitrap (1)
LTQ Orbitrap Elite (1)
LTQ XL ETD (1)
MS:1000031 (1)
Orbitrap Exploris 480 (1)

Publication Date

2012 (55)
2015 (49)
2014 (42)
2010 (42)
2011 (41)
2016 (38)
2025 (35)
2024 (32)
2021 (32)
2013 (31)
2009 (29)
2026 (21)
2023 (20)
2017 (16)
2020 (15)
2022 (13)
2019 (13)
2008 (10)
2018 (9)
2007 (6)
2006 (3)
2005 (3)
2004 (2)
2001 (1)

CHEBI ID

CHEBI:17821 (4)
CHEBI:17368 (4)
CHEBI:15741 (4)
CHEBI:20067 (3)
CHEBI:22660 (3)
CHEBI:27226 (3)
CHEBI:17568 (3)
CHEBI:15611 (3)
CHEBI:7916 (3)
CHEBI:16704 (3)
CHEBI:16750 (3)
CHEBI:16708 (3)
CHEBI:15318 (3)
CHEBI:1148 (3)
CHEBI:16737 (3)
CHEBI:16919 (3)
CHEBI:16865 (3)
CHEBI:16811 (3)
CHEBI:25017 (3)
CHEBI:17596 (3)
CHEBI:17754 (3)
CHEBI:16449 (3)
CHEBI:15366 (3)
CHEBI:32816 (3)
CHEBI:17234 (3)
CHEBI:78320 (3)
CHEBI:28044 (3)
CHEBI:15428 (3)
CHEBI:28300 (3)
CHEBI:27266 (3)

Metabolite Name

Leucine (4)
Valine (4)
Allopurinol (3)
Caproic acid (3)
Creatine (3)
Pyroglutamic acid (3)
Phenylalanine (3)
Glutamine (3)
2-Hydroxyhexanoic acid (2)
Trp-Glu (2)
Octadecanedioic acid (2)
Sweroside (2)
Indole-3-acetic acid (2)
1-Stearoylglycerophosphoserine (2)
9-Oxo-10(E),12(E)-octadecadienoic acid (2)
LysoPC(20:3(5Z,8Z,11Z)/0:0) (2)
MG(16:0/0:0/0:0) (2)
Adenosine 2',3'-cyclic phosphate (2)
Ethyl acetate (2)
N-(1-Deoxy-1-fructosyl)phenylalanine (2)
Dehydroascorbic acid (2)
Acetic acid (2)
3-Hydroxyphenylacetic acid (2)
12,13-DiHOME (2)
Deoxycholylphenylalanine (2)
LysoPC(0:0/20:4(5Z,8Z,11Z,14Z)) (2)
13,16,19-Docosatrienoic acid (2)
LysoPC(0:0/18:2(9Z,12Z)) (2)
Urobilin (2)
Indoleacetaldehyde (2)

First Public Date

2014 (33)
2024 (31)
2025 (27)
2026 (25)
2023 (21)
2020 (19)
2021 (18)
2019 (15)
2022 (10)
2017 (9)
2018 (8)
2015 (8)
2016 (5)
2013 (4)
2012 (1)

Classification

bacteria (1)

Modification

-17.026549 (1)
0.984016 (1)
15.994915 (1)
42.010565 (1)
45.029395 (1)
57.021464 (1)
6.020129 (1)
73.016378 (1)

Study status

Completed (6)
Recruiting (5)
Active, not recruiting (3)
Terminated (2)
Ongoing (1)
Not yet recruiting (1)

Study type

Transcription profiling by array (214)
RNA-seq of coding RNA (37)
Comparative genomic hybridization by array (19)
ChIP-seq (18)
Interventional (15)
Unknown experiment type (14)
Methylation profiling by array (9)
RNA-seq of non coding RNA (6)
ChIP-chip by tiling array (5)
Proteomic profiling by array (5)
Cell line - High-throughput sequencing (4)
Other (4)
ChIP-chip by array (3)
Genotyping by array (3)
MicroRNA profiling by array (3)
DNA-seq (3)
Observational (3)
Cell line - Two-color microarray (2)
Methylation profiling by high throughput sequencing (2)
Cell line - Single-cell sequencing (1)
RNA-seq of non coding RNA from single cells (1)
Cell line - One-color microarray (1)
RIP-seq (1)
RNA-seq of total RNA (1)

Release Date

2025 (159)
2023 (150)
2022 (146)
2021 (130)
2024 (116)
2020 (109)
2016 (109)
2019 (90)
2017 (83)
2018 (80)
2014 (80)
2015 (76)
2012 (70)
2013 (52)
2010 (45)
2011 (44)
2009 (31)
2026 (25)
2008 (19)
2007 (8)
2006 (5)
2005 (5)
2004 (4)
2002 (4)
2001 (2)

Lab affiliation

AG Functional Proteomics, University Hospital Jena (1)
Baker Institute (1)
Biochemistry (1)
Biomedicine Discovery Institute, Monash University, Clayton, Australia. Department of Biochemistry and Molecular Biology, Monash University, Clayton, Australia (1)
Cancer Science Institute of Singapore, National University of Singapore (1)
Cancer Science Institute of Singapore, National University of Singapore, Singapore (1)
Clinical Laboratory of BGI Health, BGI-Shenzhen, Shenzhen 518083, China (1)
College of Pharmaceutical Sciences,Soochow University,China (1)
Departamento de interacción epidemiológica, Instituto Nacional de Salud Pública. Universidad No. 655, Col. Santa María Ahuacatitlán, Cuernavaca, Morelos. CP 62100. México. (1)
Department of Biochemistry and Molecular Biology, Molecular Medicine & Cancer Research Center, Chongqing Medical University, Yuzhong District, Yi XueYuan Road, No 1, Chongqing 400016, China. (1)
Department of General Surgery & Guangdong Provincial Key Laboratory of Precision Medicine for Gastrointestinal Tumor, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, China; Cancer Center of Beijing Tsinghua Changgung Hospital, School of Clinical Medicine, Tsinghua Medicine, Tsinghua University, Beijing, China (1)
Department of Medical Microbiology, Faculty of Medicine, University of Malaya, 50603 Kuala Lumpur, Malaysia. (1)
Division of Gastroenterology, Department of Medicine, and Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, School of Medicine, Baltimore, MD 21205, USA (1)
East China Normal University (1)
Head of Proteomics Unit Spanish National Cancer Research Centre (CNIO) Address: Melchor Fernández Almagro, 3. 28029 Madrid. SPAIN Phone: +34 917 328 000 Ext. 3110 (1)
Institute for Fundamental Biomedical Research, BSRC “Al. Fleming”, Vari 16672, Greece (1)
Institute for Fundamental Biomedical Research, BSRC “Al. Fleming”, Vari 16672, Greece (1)
Institute for Research and Innovation in Health, University of Porto, Porto, Portugal; Institute of Molecular Pathology and Immunology of the University of Porto, Porto, Portugal; Institute for Biomedical Sciences Abel Salazar of the University of Porto, Porto, Portugal; Faculty of Medicine of the University of Porto, Porto, Portugal. (1)
Institute of Molecular and Cellular Biology, Department of Life Science, National Taiwan University, Taipei, Taiwan. (1)
Institute of Molecular and Cellular Biology, National Taiwan University, Taipei, Taiwan (1)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (1)
Laboratory of Experimental Medicine, Institute of Molecular and Translational Medicine, Faculty of Medicine and Dentistry, Palacky University and University Hospital in Olomouc (1)
Mannheim University of Applied Sciences Center for Mass Spectrometry and Optical Spectroscopy (CeMOS) (1)
Molecular Genetics, RPTU Kaiserslautern (1)
Molecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, PA, USA (1)
REQUIMTE-LAQV, Department of Chemistry and Biochemistry, Faculty of Sciences of the University of Porto, 4169-007 Porto, Portugal (1)
Soochow University (1)
The Affiliated Hospital of Medical School of Ningbo University (1)
The Affiliated Suzhou Hospital of Nanjing Medical University, Gusu School, Nanjing Medical University, Baita west road #16, Suzhou 215001, China. (1)
The Fifth Affiliated Hospital of Guangzhou Medical University (1)

Location

United States (8)
China (7)
France (5)
United Kingdom (5)
Italy (4)
Spain (4)
Germany (3)
Taiwan (2)
Poland (2)
Czechia (2)
Belgium (2)
South Korea (2)
Guam (1)
Finland (1)
Norway (1)
Ireland (1)
Denmark (1)
Puerto Rico (1)
Turkey (1)
Japan (1)
Russia (1)
Brazil (1)
Canada (1)
Netherlands (1)
Austria (1)
Switzerland (1)

Keyword

Avelumab (2)
Antibodies (2)
Bevacizumab (2)
ADI-PEG 20 (1)
Argininosuccinate synthetase (1)
Arginine (1)
Arginine deiminase (1)
Flagyl (1)
Omeprazol EFG (1)
Amoxicilina EFG (1)
Claritromicina EFG (1)
Nous-209 (1)
Non-intestinal type gastric cancer (1)
Advance Gastric Cancer (1)
Recurrent Gastric Cancer (1)
Gastroesophageal Junction Adenocarcinoma (1)
SOX, S-1+Oxaliplatin (1)
OS, (1)
ORR, (1)
PFS, (1)
TTF, (1)
MSB0010718C (1)
Metastatic breast cancer (MBC) (1)
Gastric and gastroesophageal junction (GEJ) cancer (1)
Castrate-resistant prostate cancer (CRPC) (1)
Adrenocortical carcinoma (ACC) (1)
Second line (1)
Anti PD-L1 (1)
Pharmacokinetic (1)
Head and neck squamous cell carcinoma (HNSCC) (1)

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Medicarpin suppresses gastric cancer growth through modulation of mevalonate pathway-associated cholesterol biosynthesis

Background: Gastric cancer (GC) is an aggressive malignancy characterized by metabolic reprogramming, including dysregulated cholesterol biosynthesis. Medicarpin (Med), a natural isoflavan isolated from Radix Hedysari, has shown pharmacological potential; however, its anti-GC activity and metabolic ...

2026-10-02 | MTBLS15900 | MetaboLights

Gastric Cancer Cell Lines

Regions of recurrent genomic amplification and deletion are frequently observed in primary gastric cancers (GC). However, identifying specific oncogenes and tumor suppressor genes within these regions can be challenging, as they often cover tens to hundreds of genes. Here, we combined high-resolutio...

ORGANISM(S): Homo sapiens

2010-05-14 | E-GEOD-10611 | biostudies-arrayexpress

ADRM1 amplified metastasis gene in gastric cancer

Selected genes within the 1 Mb minimal amplified region on 20q13.3 driven by ADRM1 in gastric cancer cell line AGS were analyzed by Gene expression Microarray. Gene Expression of ADRM1, HRH3, MTG2, LAMA5 and OSBPL2 were then compared in 16 Gastric cancer cell lines to a reference composed of mixed g...

ORGANISM(S): Homo sapiens

2015-01-01 | E-GEOD-64604 | biostudies-arrayexpress

Integrated epigenomic analyses of enhancer as well as promoter regions in gastric cancer

To understand epigenetic changes in the distal regulatory as well as proximal regions, we performed RNA-seq, MBD-seq, and H3K27ac ChIP-seq on gastric tissues and cell lines MBD sequencing of normal tissue (n), purified gastric cancer (sc), and cultured gastric cancer cell (dc) were generated by deep...

ORGANISM(S): Homo sapiens

2016-03-28 | E-GEOD-46595 | biostudies-arrayexpress

Integrated epigenomic analyses of enhancer as well as promoter regions in gastric cancer

To understand epigenetic changes in the distal regulatory as well as proximal regions, we performed RNA-seq, MBD-seq, and H3K27ac ChIP-seq on gastric tissues and cell lines. mRNA sequencing profiles of normal tissue (n), purified gastric cancer (sc), and cultured gastric cancer cell (dc) were genera...

ORGANISM(S): Homo sapiens

2016-03-28 | E-GEOD-46597 | biostudies-arrayexpress

Expression data from Helicobacter pylori isolates infecting a gastric epithelial progenitor cell line

Helicobacter pylori clinical isolates can establish themselves in gastric epithelial stem cells and this interaction may have implications for gastric tumorigenesis. Mouse gastric epithelial progenitor cells (mGEPs) were infected for 24hrs with Helicobacter pylori clinical isolates Kx1 and Kx2. Kx1 ...

ORGANISM(S): Helicobacter pylori

2010-05-26 | E-GEOD-10261 | biostudies-arrayexpress

Differential protein and glycan packaging into extracellular vesicles in response to 3D gastric cancer cellular organization

Alterations of the glycosylation machinery are a common event in cancer that leads to the synthesis of aberrant glycan structures by tumor cells. Extracellular vesicles (EVs) play a modulator role in cancer communication and progression, and interestingly, several tumor-associated glycans have alrea...

ORGANISM(S): Homo sapiens (Human)

2023-10-24 | PXD035650 | Pride

Glycosylation 3d Evs Gastric cancer

Integrated epigenomic analyses of enhancer as well as promoter regions in gastric cancer

We performed H3K27ac ChIP-seq data in seven gastric cancer cell lines to investigate the functional significance of epigenetic changes at distal regulatory regions H3K27ac ChIP-seq profiling of gastric cancer cell lines were generated by deep sequencing, in each seven samples, using Illumina GAIIx a...

ORGANISM(S): Homo sapiens

2016-03-28 | E-GEOD-75595 | biostudies-arrayexpress

Potential Mechanism of Chinese herbal formula Sijunzi Decoction in Treating Gastric Cancer

Establishment 615 mouse subcutaneous tumor model using mouse derived gastric cancer cell lines (MFC)，and intervention with traditional Chinese medicine（Sijunzi Decoction）. The mice model were indived into Model group(model), early Sijunzi Decoction (E-SJZD), synchronization Sijunzi Decoction (S-SJZD...

ORGANISM(S): Mus musculus

2025-10-31 | E-MTAB-15788 | biostudies-arrayexpress

Phosphoproteomics and global proteomic analysis of gastric cancer cell lines

proteome, pSTY proteome and pY proteome analysis was performed using 13 gastric cancer cell lines w/wo apatinib treatment.

ORGANISM(S): Homo Sapiens (human)

2023-11-04 | PXD037961 | JPOST Repository

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2108 Results

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